| Id Trinity | FTRINITY_DN59222_c1_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_15688 |
| Sequence | AAATAAACCGCAACACCCATTTGTAACATAACAGTTGATATGCCACTTTCCTTCTCCACCTTGTTCTGCATTCATTTGTATCGGCACTTTGCGAGAGATA TCTCAATTATTCACCCACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGACGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAA AAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTTAATC AGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCCAGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTT GATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAAT GCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAA GTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGC TCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTT CGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTGTGTTTCCATTTCATTTATTGCTATGGTTGTGATTATATTTATTCACATAATC TTTATGTACCTACTCTCTAGGTCATTCGTGAGTCAGGGAATAATAACACACAATCCGGGGACCGTCTCTTCTATGATTATCTTGAGAGTTGCCTTCGGCA CAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAACTCCAGCTATTACTGTTCTTCAGCTT TTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACACCCAATGGCAGTCACTAACTGCAACATTG ATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATTGCTACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTAT GAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTATGTTTGAAGTTCCCATTAAAATAT AGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGAAGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTTATTCTTATTAGAGACA TTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACGCAGATACTGCACTTCCTGGGAGT TGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTCGTTATATCTATAACAGAGTGCATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACA CTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCCTCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGACAATGACGATGAGGTTCGTGATAGGG CAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCTTTGGGTCATTTGATATCCCACTTGT CAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCTGAAGAGGCTTTTGACATTAACTCGGTGCCCAAGGTGGTCAAGTCTCAGCCTCTTGCAGAGAAG AAAGCCACAGGTAAAAAACCAACGGGTTTGGGTGCTCCTCTCAGTGCTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTGTTGTCCATTCCTGAGT TTGCAAATTTTGGGAAGCATTTTAAGTCCTCACCGCCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAG GCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGATGCATCAGAAGCAGAGGAGTTTTCT GAGGTTTTTGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCATTCGAGAAACCCGAGGGACTGCCAACAGCTGGAAAAT TTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAGATGAATACCAGCTTGAAGATCTGGA GGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCTTGGACCCTGATTCTGAACGAGTGGATGAATATGGT CTCGGCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAATCTTCTTGGATTGCAGCCTTGTGAGGGCACAGAAGTTGTTCCACCCAATTCAA GGTCACACTCGTGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGATTGTCTTTTGGACTTGACGGTCCAAAGGATATTGCAATGAA ACTGTCTGTCAGATCCGAGGATGATGCTGTCAGCGATTTCATTCATGAGATTGTGGCAAGTGGCTAGTTCTCTAAGTCAAGAATTGTTGACTCAACTCAG CCTTTCTTCTTGTTAATGAGATTGGAGTTAAATAGGCACATAGATAGATGTGTGTAAAGAATTGCAAAACTGAACGTTGAGCTTAGCATATTGCGATTTA TTTGTCCCTCAAAGCTTGTTAGACGTAGCAGCGATACCTCAAGTCCCAAACTTCCATCCTCGTGATTATACTTTTTTAGCAAATGTTATATGAATTTTGA GGATTTTGCCGTAATATTTGTTTCATCAATGAACTGGATTTTTGTTCAGCAGTTGTTTTGTCTAAAAATTACGCCTATATTTAGGGCTACATTTAAATAA GATTATAGTCTTTATGTTTTTTATAAGATTGTCATTGGATATTAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15688
| Blastp | Coatomer subunit gamma-2 from Oryza sativa with 85.3% of identity |
|---|---|
| Blastx | Coatomer subunit gamma-2 from Oryza sativa with 83.93% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (4342665) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448506.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |