Ll_transcript_15690

• Id Trinity: FTRINITY_DN59222_c1_g1_i20
• Name Transcript: Ll_transcript_15690
• Sequence: AAATAAACCGCAACACCCATTTGTAACATAACAGTTGATATGCCACTTTCCTTCTCCACCTTGTTCTGCATTCATTTGTATCGGCACTTTGCGAGAGATA TCTCAATTATTCACCCACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGACGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAA AAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTTAATC AGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCCAGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTT GATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAAT GCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAA GTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGC TCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTT CGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGGAATAATAACACACAATCCGGGGACCGTCTCTTCTATG ATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAAC TCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACACCCA ATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATTGCTACACTTGCTATTACTACTCTCTTGAAGACAGGAA ATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATT ATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGAAGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGAT TCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCA CGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTCGTTATATCTATAACAGAGTGCATCTTGAGAATGCAAC TGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCCTCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGAC AATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCT TTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGTAAGCCATCTCCATTTTCTTTCCTTTCATTAGTTAAGGGCTTTTCT CAACTTTTTTATATGTGAATCCAGGAGCCCTCAGATGAGGCTTTTGACATCAACTCGGTGGCCAAGGATGTCAAGTCTCTGCCTCTTGCAGAGAAGAAAG CCCAAGGTAAAAAGCCAACTGGTTTGGGTGCTCCCTCTAGTGCCCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTGCTGTCCATTCCTGAGTTTGC AAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCTGTTAATGTTGTTAAACACATTTTTGATAGGCAT GTTGTGTTTCAGTACAACTGCACAAATACAATACCAGAACAGTTGTTGGAAGATGTTATCGTAATCGTGGATGCATCAGAAGCGGAAGAGTTTTCCGAGG TTTTCGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACCTTTGTGGCATTTGAGAAGTCTGAGGGGTTGGCACCAGCTGGAAAATTTTC TAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAGATGAATACCAGCTTGAAGATCTGGAGGTT GTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCTTGGACCCTGATTCTGAACGAGTGGATGAATATGGTCTCG GCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAATCTTCTTGGATTGCAGCCTTGTGAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTC ACACTCGTGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGATTGTCTTTTGGACTTGACGGTCCAAAGGATATTGCAATGAAACTG TCTGTCAGATCCGAGGATGATGCTGTCAGCGATTTCATTCATGAGATTGTGGCAAGTGGCTAGTTCTCTAAGTCAAGAATTGTTGACTCAACTCAGCCTT TCTTCTTGTTAATGAGATTGGAGTTAAATAGGCACATAGATAGATGTGTGTAAAGAATTGCAAAACTGAACGTTGAGCTTAGCATATTGCGATTTATTTG TCCCTCAAAGCTTGTTAGACGTAGCAGCGATACCTCAAGTCCCAAACTTCCATCCTCGTGATTATACTTTTTTAGCAAATGTTATATGAATTTTGAGGAT TTTGCCGTAATATTTGTTTCATCAATGAACTGGATTTTTGTTCAGCAGTTGTTTTGTCTAAAAATTACGCCTATATTTAGGGCTACATTTAAATAAGATT ATAGTCTTTATGTTTTTTATAAGATTGTCATTGGATATTAC
• Tissue: flowers
• Gene name: LI_gene_83979;
• Additional information: details;

Expression of Ll_transcript_15690

FPKM

• FPAB: 0.2
• FPNAB: 0.2
• LF1: 0.4
• LF2: 0.1
• LF3: 0.2
• LF4: 0
• UF1: 0
• UF2: 0
• UF3: 0.3
• UF4: 0.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_15690

• Blastp: Coatomer subunit gamma-2 from Oryza sativa with 89.95% of identity
• Blastx: Coatomer subunit gamma-2 from Oryza sativa with 89.95% of identity
• Eggnog: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240)
• Kegg: Link to kegg annotations (4342665)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019448506.1)
• Pfam: Adaptin N terminal region (PF01602.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;