| Id Trinity | FTRINITY_DN59222_c1_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_15676 |
| Sequence | AAATAAACCGCAACACCCATTTGTAACATAACAGTTGATATGCCACTTTCCTTCTCCACCTTGTTCTGCATTCATTTGTATCGGCACTTTGCGAGAGATA TCTCAATTATTCACCCACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGACGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAA AAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTTAATC AGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCCAGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTT GATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAAT GCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAA GTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGC TCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGAGGAAATGTT CGCTCACCCTTGGCCCAATGCCTTTTGATCCGTTATACAAGTCAGGTCATTCGCGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATT ATCTTGAGAGTTGCCTTCGCCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGTGTAACAAGCCGAGAATTAACTCC AGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCTTCTAAACCAGTCTTGAGATTTGCTGCCGTCCGCACCTTGAACAAGGTGGCAATGACACACCCAATG GCAGTCACTAACTGCAATATTGATATGGAAAGCTTAATCTCCGACCAAAACAGAAGCATTGCCACACTTGCTATTACTACTCTCTTGAAGACAGGAAATG AATCAAGTGTGGACCGTCTTATGAAGCAGATCACTAATTTCATGTCTGATATTGCCGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTG CTTGAAGTTCCCTTTAAAATATAGATCTTTGATGAACTTCCTGAGTAACATTCTCAGGGAAGAAGGTGGATTTGATTTCAAGAAAGCAATTGTAGATTCA ATTGTTATTCTTATTAGAGACATCCCTGATGCAAAGGAAAGTGGGTTGCTTCATTTGTGTGAATTCATTGAAGATTGTGAATTCACTTATTTATCCACAC AGATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACATCAGACCCAAGCAAATATATTCGTTATATTTATAACAGAGTGCATCTTGAGAATGCAACTGT CAGGGCCAGTGCTGTGAGCACATTAGCAAAGTTTGGTGCTGCAGTTGATGAATTGAAGCCTCGCATATTCGTTCTCCTAAGGCGATGTCTTTTTGACAAT GATGATGAGGTTCGTGATAGGGCAACACTTTATCTGAGCACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCTTTG GGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCCTCAGATGAGGCTTTTGACATCAACTCGGTGGCCAAGGATGTCAA GTCTCTGCCTCTTGCAGAGAAGAAAGCCCAAGGTAAAAAGCCAACTGGTTTGGGTGCTCCCTCTAGTGCCCCCCCATCTACTGCAGATGCATATGAAAGG CTGCTGCTGTCCATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCTGTTAATG TTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAATACAATACCAGAACAGTTGTTGGAAGATGTTATCGTAATCGTGGATGC ATCAGAAGCGGAAGAGTTTTCCGAGGTTTTCGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACCTTTGTGGCATTTGAGAAGTCTGAG GGGTTGGCACCAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAGATG AATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGTATGGGCCCTGATTC TGAGCGAGTGGATGAATATGGTCTTGGCCCAAGGGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAACCTTCTTGGAATGCAGCCTTGTGAGGTAAGC CAGCGTATCTGTTGCTGCTCTGGTAAATGTTTCTCATGTGAGCTGTTCGCATTATTTTTGTTGCAATTTAAGGGAATAATTTTCCGTTTTAGTTCTGCCA AAAGACCATTGTAATGTTGCTGTCTATCAAGATAGGATTACAGATTTGTTTTTTATGTATAATTTATCAACCCTTATATTTCTATGTTGTTTTCTGTTAC ATAATCTTTTACACCTTTATATCCGTCTTTCTATCCTATCACATCATCAATACCATCTATCATCTTCTCTTCTCTTTCTATCTCTTTCATCCTAGACCGA CCTACACCTCTTTGAAATATGTAAGATGGTCATTTTGCATAGTTTATTTATTATTAAAAGTTGGTTTTCTCGTAAGTATTACTATAAGGTATACATTTTT TGTACCTTGAAGCTGAACTTTACGACATTCCCAAACTCAAACCACCAATATGTCCTTTTATGCATGTAAAGTGTTGTTTGGGCAGAATGCTTTCTTATGC AAACTTGCAGACATACACATTCACTGTGCATAGGGAACCTTACTTCAAAGAGATTCTTAGGTGCTAGAGGGCTAGGAGACTGTTTTTCCATGCACAAAGA TCAAGCCCAAGCGATGATAGTTAGATGCTTAGATGCAAATACATTTGATGCATCTCAATGCTGTTGTATGCACAAAGAATCTAACGTAGGAGATTTTTAG GTCCTCATGGGAAGACATTTCTTTTACTCCATGAGGCACTCAAGAATTCCTCAAATGAATATAGTATCTACAACCCACTGTCTGCTTATCATTTATTCAC TGGTATATTCAGGGAAGATGATAACTTTTATTTGTTCACTATGTGCAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTCACACACATGCTTAATGTCAG GTGTATTCATAGGGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15676
| Blastp | Coatomer subunit gamma from Arabidopsis with 83.41% of identity |
|---|---|
| Blastx | Coatomer subunit gamma-2 from Oryza sativa with 84.5% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (AT4G34450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454169.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |