Id Trinity | FTRINITY_DN59232_c1_g1_i6 |
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Name Transcript | Ll_transcript_15739 |
Sequence | CTCCTACCAAAAAATTACCCAATACCTTTAGCTAGCCAGAAAACAGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTG AGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTATATGTGAAGATGACAGGTTTGAACTTGATATGTTATTAGAGTCTGT AAATGTGACAACTAAGCGGGTAGAAGAGCTGTTAGAAAAGATCAATAGAAATGTAATTAAAGGAGGCAGTCATATTCGTATTGAGGAACACTTAACAGGT GATGGATTTTCAACTGATCAATGAAATATTTGGATGCATATACGTAGTATGAGGTAATTTCTTGAAGTTTTCATATTTTGACGGGGTTTTACTCTGTATG CTCTTTTAGCTCTAAATCTTAGGTGCATTGAACGATTGTATGGTGACCACGGGCTTGATGTGATGGATGTGTTAAGGAAGAATGCATCTCTAGCTTTGCC AGTGATATTAATGCGCTTGAAACAGAAACAGGATGAGTGGGCAAGGTGTCATTCAGATTTTAATATAGTTTGGGCTGAAATATATGCTAAGAACTATCAC AAATCTCTTGATCACCGCAGTTTCTACTTTAAGCAACAGGATACAAAGAGCTTGAGCACTAAAGCCTTACTGGTAGAAATAAAAGAAATCAGTGAGAAGA AACGAAAAGAAGATGACATTCTTCTTGCCATTGCTGCTGGAAACAGGCGGCCTATTCTTCCAAACTTGGAGTTTGAGTATCCTGATCCAGATATTCATGA AGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACAACTGCGCAGTTGGATAAAGTTATGCAGATTTGGACAACATTTTTAGAACCAGTG CTTTGTGTTCCTTCTCGGCCCTCGGATGCCGAGGATACAGAAGATGCTGTCAAGGCTACATATAATTCTTTGAAAAGTGGAACTGCAGGTTTTAACGAGA GGGATGATAGTCCTGGTTTTGGTACTAGTGTAATGAATTCAAAGCATTTTAATAGTTCTAGAATTGGGGATGTGTGTATACCTTTAGATAAGTCAAATTC TATCAAAGCATGCCAATCAAATAGCGATTGTGGGGTTAAAGAAGATAAGTGTCTTGGTCCAGACCCTAGTGTGAGTAAAACTAAAACTTCGGACAGTAAT ATACCGGATGACATAATGAATATCAGTGCATTCACGCCTGATGAGTTATCAGGAGTCAATAAGCAAGATCACTCGGGTGAGCAGTTAGCGAATACTAATG TCTCGCCGGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAGCATAGGGAATGCATCAGGTCCTGCTGCTACTCCATCTAGAACCGGTAATGTTTCTGT CGAGGGAGGACATGATTTACCTTCAGAGGTTGGTGATTGTACAAGACATGGTACATCCACAAATGGGGCCGTCACTGAAGGCATCGGAGTTAATAGACAC AAAGAAGTATCAGTTCAACATTTTAAAGGTGACAGAGAAGAGGGTGAGTTATCTCCAAATGTTGACTTTGAAGAGGATAACTTCAGAGTTTATGGAGATG GTAGCTCGGACGTACTGCATAAAGCAAAGAATGGTGGTTTGAGTCAGCAATACCAAAATAGACACAGGGAAGAAGCTTTTGGTGAAGCCAAAGGAGAAAA TTATGCCAATGCTGATGATGAAGGTGAGGAAAGTCGTCACAGGTCATCGGGGGATATTGGAAATGCTTCTGTAAATGATGTTTCTGGAAGTGAGTCTGCT GGAGGCGAGGACTGTTCTCGAGAGGATCATGAGGATGGGGAACACGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGGCGATGCCCATGATG TTGAAGGGGATGGAACCTCATTGCCACTTTCAGAACACTTCCTTCTAACCGTAAAGCCTCTGGCTAAGCATGTACCGCCGGTGTTGCACGTGAAAGAATG GAATTCTCAAGTTTTTTATGGAACTGATTCCTTTTATGTTCTGTTTAGACTTCATCAGGTACCAAAATATATATATTTACAAACAGACATACCCCTCCTC TCTGCCTCAGTCAAGGTTTTCAAAACCTACATTGAATGTCCCTGTACTTTAAAATTGTACAAACACCAGGTCAAAATTTTCATTTAAAAAAAACTTCAGA ATGATATGCCAAAAATAAAATGTCTAGACTACCTTCCTCTCTTGGTTTTTACTTGTGCTTTTTTTAAAGTTCTTTCTACTGCCAGGTTATTGGGTATGCA TTACCAATAGAGTCATCCCCAAAAAGTTTGAGCCTGATTAGATTCTTTTGTTGAGTTGTCTTTGGTAGAAACAGTTCATTTTGGGAAAAGCTCCAATTTT TAGAATTTAAGAAGCTCATGAGCTTAGTATCCTAGGTTGGAACAAGTTGATAGGAGCTCCTTTTTTACGTCCCCACATGGGGAAACATAAAAAAGGAAAG AGAGGGATGAGGTTTCTCTCGCTTTTGGCATAGCGGGCCATGGCGGGAGGCCCGCACGACGGGCTATTAGCTCAGTCGAACACAATAATACATATCATAC ATAACATGCTATTCTAGTGAAAAAAATAAAATGAAATGGAATGGGGAGTGCCATACCGCTTTGCTGTTCCCATGCTGAATCAGCATTTATTCCTGCTGGT AGTATGGACCATCTTCCTCATAAAGCTTTTGGTTTAGCAAGTGCTAAGTGTATGTGTGGACACATCCAATATATGAAATGTGGCATCAACTTCATTTTTT CTGTATCTAAATGACTACATCATATGGGCCACACTGATTTGTGAAATTGGTATTCTTGATTTAAATCTGATTACTTCAGGGAATTAGATGGCTCTGGGAC ATGAACAAGATTGTTGTATATTTAGAGATAATGTAGGATTGGGGACAGTGGATTTTATTAGGGGAGGACAGTGGGTGATGCTAGGATGGTCGTTGGGTAA AGTTTTGATATAGGAATGCTGTTACCAGAACTGGTTTTCTGGTCAGAGTAGTGGGAATGAACGAATATGCGACATGTGGTTTTCTATATTTTTGTGGTGG TTCAAAGCGAGGGGTGATGCGGAACCCAAGCTGTCACAGCTCCAAAGGGGGAGGCAGAAAGGAAAGAAAAAATTGAAGCTGTGCCACCTTTGAAGATGGG GTATTTTGGTCTTAGAATAATACTATGTAACTGTCAGGTTTCTGCAAGGAAAAGGAGGTGTTTGTACAATTTAAATTTTCTGGGGGTGAGTGACCTAATA TAGGTTTTGGTCTAATGTGTTGGGTGTGTATGGCTGTATATATGGTTGTAGACTAGACAGAATTTTTTGAGCTTATTATGTCATTATTATATATTTTCTT TTGCTGATCTGACAGACGTTGTATGAGAGGATACGATCAGCAAAGATTAACTCATCATCTGCTGAAAGAAAATGGGGGGCTTCAAATGATACAAACTCTC GTGATCAATATGACAGGTTCATGAATGCCCTTTACAATCTATTGGATGGTTCTTCTGATAATGCTAAATTTGAGGACGAATGTCGAGCTATCATTGGAAC TCAATCATATCTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAGCAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTGCTTCAA CTATATGCATATGAGAAATCAAGAAAACCTGGAAGATTTGTCGACATTGTTTATCATGAAAATGCCTGTGTTCTTCTTCATGATGAGAACATATATCGTA TCTAATATTCACCTGAAAACCAATGCAATTGTCTATACAACTGATGGACTGTGGATTTGATAAGCCTGAAATGGCTGCTGTGTCGGTGGACCCTAAATTT TCAGCCTATTTGCACATTGATTTCCTCTCTGTTTTCCCTGACAAAAAGAAATTAGGAATTTTCTTGAAGAGGAACATATGTAGATATACTTCTAGTGACG AGTTAGCAAGCCAGGCTATGGAAGGACTTCAAATTATTAGTGGTCTGGAGTGTAAAATAGCTTGTAATTCTTCTAAGGTGTCATATGTGTTAGGTACTGA ACTACTGAAGACTATTTGTATCGGATGAAAAGTAAAAGAAGATCCTTGCATCCGAAGTGTTCATGTCATGAACAAACATATCCTTCAAACATTTGTTCAA GAAGACAACAGCTGTCCCGCAAATTGTTTTCCATTATATGATTGTGTCCATTCTGAGATGGCTATGAGACACTGGATTAAAACAACATCCTATCCAAGGA TATGATCAGAGTCTTTCTGAAATTATTTTTTCACATTTTTCATACCAGCAGCAACCTAACAAAGCTTACAGAAGAGGAAGGGCTGAGAGGAGACTGTTGT ATACTGTAATTTGATTCCATTCATCCATATTTTTAGCTGTTACAACTCTGTTGAGGTTATTGAATTATGGAACACTTGGTGGCTGCCATTGGCCCCCAGT TTCAAATATGAAGTGTTTACTGAAAATGCCATAATCTATATGAACATAAATTTCACTACCTCTATATGCATTGTAATGAATGGCTAGTGTATTAAGAGTG CTAGGAATAGTGATGCCCTTAGATATGTGATGTACCCAAAAGATTGATCATGGGTTGATAATAGAAGTGTAGTTTGTTGTGGTGGTGATGGAGTTGAGAA GGGGTAACAATGTTGGTGAGGTGGAGGGGAAAGATATAGTGAAACAGGACTGGACAGAATGGTTGAAGCAGAACGATGATGGCAAAGAGGGCCGGAGGCA GGTGGCGTTGGCCGGAGTATGGTGGTTTGATTGGCATGGATAGAGAAAAAAAATAGAGGTAAACTTGTCATCTGAATATTTTTACGTCTAGTTAACGTTT TGTAATAATAAATCAAGCTTTGTAAATTGTAACTAGAGCATGTGAATATGTGATGCTCCACTTATTACCCCTAGTATTAAAAAACTTAATTCTTTAGTCA CTATCCTATTCAACACACCCTACCATTTTTTTTTTAAATTTTTTTAAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_84104; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15739
Blastp | Paired amphipathic helix protein Sin3-like 4 from Arabidopsis with 49.01% of identity |
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Blastx | Paired amphipathic helix protein Sin3-like 4 from Arabidopsis with 51.84% of identity |
Eggnog | Paired AMPhipathic helix protein(COG5602) |
Kegg | Link to kegg annotations (AT1G70060) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019445511.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |