Ll_transcript_113022

• Id Trinity: FTRINITY_DN59363_c3_g1_i7
• Name Transcript: Ll_transcript_113022
• Sequence: TTGGGTGGATGAGAGAGTTGTGCCCAAGGATCACTTAGAAAGTAATTACAAACTTGCTTATGATGGATTTCTCTCCAAGGTACCAATTCCACCAGTGAAT ATTTATAGCATTGATGATGCCCTAGAAGCTGATGGAGCAGCTGATGTTTATGAAACAACTCTGAGACGTTTGGTTAAGAATGGTGTGATAGCTACATCAG AAAATGGATTTCCAAAATTTGATCTCATGCTACTAGGTATGGGCCAAGATGGGCATGTAGCTTCTCTATTCCCAAGGCATTCTCTTGTGAAAGAGGACAA AAAATGGGTTAGCTTCATCAAGGACTCACCAAAACCACCATCTGATAGAATCACATTAACCTTTCCAGTCATAAATGCTTGTTCAAACATAGCTATGGTG GTGACTGGTGCTGGTAAAAACGGTGCAGTTTATTCTGCCCTAAGGGGTGATGAAAAAAGTGATAAATTACCTGCAGGGTTGGTTTCATCTGAAGGGGAGT TGAAATGGTATTTAGACATAGGTGCTGCTTCAATGCTGTTTAAGGAGTAGATACATGTCATATGCCATTAAAATTAACATCCCTCTATTTATTTACATCT ATGTAATTTGAACCAATTATTTTGCTGGGCTTTTTTTAACTATGTGTATCCTAAAAAATAAGTAAATGATCTAATTATTAATATAATATATGTTTAGTGT GTTAGTTATTTTATTAGTTTTATTTTCTGTGTTGGGTTAGTGGGTGTGTGAGTAGTTTAGCAAGTTACCCCATGTTTAGGGGAGTTATTATGTGTGTAGC TTGAAAACTGATGTAACCTCTCTTTACTTTGCCTATTTTAAGGCTGCCATTAGTGCATAATGAAGACACCAGTTTGCACATTTCTTTGCCTAACATTGGT ATCAGAGCCAGAAACCAAATACACTTTCAATTTTTTTCTCGGGCAATCCTTTTTCTCTTCTTTCTAGCACATAAGTCGTACCCACTTTCCCCACCAACTA AAGTATTTTCAGAGAAGAAAAAAAAACCAGACGCTGCAAGTTTGCAAATTTGCAGCAAATAGATCATTTTGAGAGAATGGTTACTGATAATTTTGTGCAA CCAGTCATTCCACGTTTTGATGGTCACTATGAACACTGGAGTATGTTGATGGAAAATCTTTTAAGGTCCAAGGAGTACTGGCAAGTAGTTGAAGATGGTG TTTTAACACCAGAAGAAGACAGAGAAGTTACTGCTGCACAGAACAGAGAGCATGATGCAATGAAGTTGAAAGATTTGAGAGCAAAAAATTTCTTATTTGA AGTCATTGATCGCTCTATCCTGGAAACCATTCTTTGCAAAGAAACTTCCAAGGATATTTGGGATTCAATGAAAAAGAAATACCAAGGCTCATCTAGAGTC AAACGTGCTCAACTTCAAGCTTCGAGAAGGGACTTTGAAACTTTGCAAATGAAGGAAAGTGAGTCAGTCACTGATTATTGTTCAAGGGTCATGGGAATTG CAAACAGCATGAGAATTCATGGAGAAAAGATGGGAGACACTCTTATTGTTGAAAAAATTCTAAGCTCGCTCACACCAAAATTTGACTATGTGGTGTGTTC AATTGAAGAGTCTAATGACACTGATGAACTCTCTCTTGATGAACTTCAGAGTTCCTTGTTGGTTCATGAACAAAAGATGCATAGAAGTTCAAGAGTGGAG GAACAAGCATTGAAGGCTTCTACCAATACTCATTCCAATAACTTCAGAGGAAGGGGTAGAGGTAGAGGTAGAGGTAGAAGATATGGAGGTCGCGGAAATA GAGATTCCAGCAGGAACTTTAAAGACAATCCTCACCAACAACAAGGAAGAGGTAGAATTTATGAAAAACCCAAGGTAGAGTGTTTCAGATGTCATAAGTT TGGTCACTATGCATATGAGTGTTACACAAAATTGACTAACTACAAAGGGAAAGGAGAACAATCTAACTTTGTAGAGGAGAAGGAAGAAGAAACATTGCTA ATGACATCTCATGAGAAATTCCAATCTGATGTATGGTATATTGATATTGGTTGTAGCAACCACATGTGTGGAAGTAAATCTTCTTTCACTTATTTAGATG AAAACTTTCATTCTAAAGTAAGTTTTGGTGATTGTTCTACTGTAAATGTGATGGGAAAGGAGACATTAAAATTAAAACTAAGAATGGTTTGGTGGAAACC ATCTCTAATGTATTTTATGTTCCTGACTTGAAAAGCAATTTGTTGAGTGCTGGTCAATTGCAGGAAAAAGGTTATATAATAACCATACAGAAAGATGCTT GTGAAATATATGATCCTATCAGGGGAGCCATTGCAGTGGTTGAAATGAGTTCTAACAGGTTGTTTCCTTTGAAGATTCAAAGTGCACAAACCTGTTTGGT GAGTGAAGTGAAGGATCCCTCATGGCTTTGGCATTTTCGCTATGGTCACTTGAATTTCAATGGATTGAAGACACTTCATCAAAAAAATATGGTGGTAATT AATCCATCTCAAATTTGTGAAGAATGTGTTGTTGGCAAACAACATCGTTCATCATTCCCACAAGGAAAATCATGGAGAGCAAAACAAGTTTTGGAGTTGA TTCATTCTGATATTTGTGGACCTATTAATCCTACCTCAAATGGTGGTAAATGGTACTTTATTACATTTATTGATGATTATAGTTGAAAAACATGGGTTTA TTTTCTACAGGAAAAATCTGAGGCTCTATCAGTTTTCCAACAATATAAAGCACTTGTTGAAAAAGGAAGTGGATATGCAATCAAAGTTCTTCGCAGTGAT CGTGGTGGTGAATACAATTCACAAGAATTTGTAAATTTTTGTGACATACATGGAATCAAGAGGCAACTTACAGCAGCTTACACACCACAACAGAATGGCA TTGCAGAAAGGAAGAATCGAACAATCTTGAATATGGTTCGAACAATCTTGCAGATGAGTGGAGTGCCAAGGAATTTTTGGCCAGAAGCTGTAAATTGGAG TGTGCATGTGTTGAATCAAAGTCCAACCATGGCAGTGAAGGATGTAACTCCAGAAGAAGCATGGAGTGGTGTCAAGCCTGAAGTTGGATACTTTCGAGTG TTTGGATGTGTTGCACATGTACACATTCCAGACAAGAAGAGAATAAAATTAGATGATAAGAGTTTTCAGTGTGTGTTGTTGGGTGTGAGTGAAGAATCAA AGGCTTACAGGCTTTATGATCCTGCTTCTAAACGCATTGTTGTAAGCAAAGATGTCATATTTGAGGAGAGTATAAGCTGGGATTGGGGAAGAAATATAGA AGAAGTAAAACTTGATATTTTAGAATGGGGAGATGAAGATGAATCTGATCAAGGTAATGAGAGCAATGAGCATGAAGAAGATGGTGGGGACTGTAACACC GCGAATTTTATGAATTTTGAATTATGAGATTTTATTATTATTTTTAATAAAGGTATTTTCGAAAATGAATTTCTGGGAATTTTTGGTAAAGAATTAGACA AAACTATAGTTGAGTTGAGTTTTAGT
• Tissue: flowers
• Gene name: LI_gene_85446;
• Additional information: details;

Expression of Ll_transcript_113022

FPKM

• FPAB: 0.7
• FPNAB: 0.4
• LF1: 0.3
• LF2: 1.2
• LF3: 1
• LF4: 1.3
• UF1: 0.7
• UF2: 0.8
• UF3: 0.6
• UF4: 1

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_113022

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 22.73% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 40.41% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019465391.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;