Ll_transcript_115608

• Id Trinity: FTRINITY_DN59378_c6_g3_i1
• Name Transcript: Ll_transcript_115608
• Sequence: CTAGAACTATTACATGTGCTAGCTAGGCATCCAAATTCCAAAAAACAACTTGTTTCAGCTGGAATTTTGTCTGAATTATTTGAGAATAACATTCATCAAG GTCCTAAAGCTTCCCGTTTCCAAGCAAGGGCAGTCCTTTGTTCTTTATCTGAGGGTGATGTAAATGCGGTTACTAAATTGAACAGTCTTCTACAAAAGAA AGTCATGTACTGCCTTGAGCATCATCGCTCCATGGACATTGCTGTGACTACACGTGAGGAGATGTTATTACTTTCTGAGGTGTGTTCTTTGGCTGATGAA TTCTGGGAGTCAAGGCTACGCATTGTATTTCAGTTGTTGTTTTCTTCTATTAAGTTGGGTGCAAAGCATCCTGCTATATCTGAGTATGTCATTCTTCCAT GCCTTAGAATTGTATCTCAGGCATGTACACCTCCAAAACCTGATACACCAGAGAAAGAGGATGGCCTTGGTAAGCCTTCTGTACAGACAAAGGATGAAAG CGATTCGAATGTATCTGGGTCTATAACTAGTGCTGTTGTTGGGACCAAGTCATTCTGTGATCCATCAGAAAGAAATTGGGATGCCACTCCGAAGACTCGG GATATTCAGTTACTTAGCTATTCAGAATGGGAGAGGGGAGCTTCCTATCTGGATTTTGTTAGGAGGCAATACAAAGTTTCTCAGGCTGTCAAAGGTGCTG GGCAGAGGTTACGAAGCCAAAGACATGACTACCTGGCACTTAAATATGCTCTGAGGTGGAAGCGCCGTGCCTGTAAAACAGCTAAAAGTGACTTATCATC AGTGTTTGAGTTGGGATCATGGGTTAAAGAACTTATTCTCAGTGCTTGTTCTCAATCCATTAAATCAGAGATGTGCATGCTTATAAGCTTGCTTTGTGCC CAAAGTTTATCCAGGAAATTCCGGTTGCTGAACCTATTGGTGTCTTTGTTACCTGCAACACTTTCTGTGGGTGAAAGTGCTGCAGAATATTTTGAGTTAT TATTCAAGATGACTGATTCAGAGGATGCTCGTCTATTTCTGACTGTTCGAGGCTGTTTACAGACAATTTGTACTCTAATTACCCAAGAAGTAAGCAAGGT TGAGTCTCTGGAAAGGAGTCTGCACATTGATATATCTCAGGGATTTATCCTTCACAAGCTCATAGAGCTTCTTAGTAAATTTCTAGAGGTTCCAAATGTC AGATCCAGATTCATGCGAGATTGCTTGCTTTCTGAAGTTCTTGAAGCGCTTATTGTAATCCGTGGCTTGATAGTTCAAAAGACAAAGTTGATAAGTGATT GCAGTCGGCTTCTAAAAGATCTTTTAGATAGTCTACTGCTAGAAAACAGTGAAAATAACCGGCAGTTCATCAAGGCCTGTATCAATGGTTTGCAAATACA TGGGGAGGAGAGGAAGGGGCGTGCTTGTTTGTTTATCTTAGAGCAGCTATGCAATCTTATCTGCCCGTCAAAGTCCGAACCTGCATATTTCTTGGTCCTC AACAAGGCTCATACCCAGGAAGAGTTTATTAGGGGATCAATGACTAAAAATCCTTATTCAAGTGCTGAAATTGGTCCATTGATGCGCGATGTTAAGAATA AGATTTGCCATCAGTTGGATTTGTTAGGTCTTGTTGAGGATGACTATGGAATGGAGTTGCTAGTAGCTGGCAATATCATCTCTCTTGATTTGAGCATTGC ACAAGTTTATGAGCTAGTCTGGAAGAAATCAAATCAGTCTTCAAATAATGTGACTAATCCCAACTTGTTGTCTCCAAATACTGTTGCCTCATCCAGAGAA TTCCCACCTATGACAGTTACATATCGACTCCAGGGAGTGGATGGTGAAGCAACTGAGCCTATGATTAAAGAGTTGGAGGAAGATAGAGAGGAATCTCAGG ATCCAGAGGTTGAATTTGCTATAGCTGGTGCCGTTCGTGAATGCGGTGGACTCCAGATATTATTGGGCATGATTCAGCATTTGCGAGATGATTTCAAGTC GAACCAGGAGCAGTTGGTGGCAGTTCTTAATCTTCTTATGTACTGTTGCAAAATTAGAGAAAACAGGCGGGCCTTGTTGAAGCTAGGGGCTTTAGGCTTA CTTCTTGAGACAGCAAGGAGGGCTTTCTCAGTTGATGCCATGGAGCCAGCTGAAGGCATACTTTTGATTGTTGAAACTCTAACATTAGAAGCAAATGAAA GTGACAATATAAGCATCACTCAAAGTGCGCTTACTGTCTCTAGTGAAGAAGCTGGGACAGGTGAACAAGACAAGAAGATAGTTCTCATGTTCTTGGAGAG ATTGTCTCATCCATTGAGCCTTAAGAAATCAAACAAACAACAGAGAAACACGGAGATGGTTGCTCGGATATTGCCTTACTTGACTTATGGTGAACCTGCT GCCATGGATGCTCTCGTCCAACATTTTAGCCCTTACTTGCAAGATTGGGGAGCATTTGACCTTTTGCAGAAACAGCACCTGGACAACCCGAAGGATGAGA GCATTGCCCAGCAAGCTTCAAAGCAGAGGTTCACTCTAGAAAATTTTGTTAGGGTTTCAGAGTCACTGAAGACAAGTTCCTGTGGGGAAAGATTGAAGGA TATTATCGTAGAGAAAGGTATAACTGGAACTGCAATAAGACATTTGAAACATAGTTTTGCCAATGCAGAGCAGGCTGGTTTTAAGACTAGTGCTGAATGG GGACTGGGATTAAAATTACCGTCTGTCCCTCTTATATTGTCTATGCTCAGAGGTTTATCCATGGGTCATCTGCTCACTCAAAGGTGTATTGATGAAGAAG GTATCTTACCGTTGCTGCATGCGCTAGAAAGAGTTTCGGGAGAAAATGAGATTGGAGCAAGGGCTGAAAATTTGCTGGACATGCTATCTAACAAGGAAGG AAAAGGAGATGGATTCTTGGAGGAGAAGGTGCGTAACTTGCGGCATGCTACTAGGGATGAAATGAGGCGCCGGGCTTTGCAGAAGAGACAAGAGCTGCTT CAGGGGCTTGGGATGCGTCAAGAACTGTCTTCAGATGGAGGTGAACGCATTGTTGTTTCCCAGCTAGTCCTTGAAGGTCTGGAAGATGTGCAAGAGGAGG AGGATGGGCTGGCATGTATGGTATGCCGGGAGGGATATAGTTTAAGGCCTTCTGATTTACTTGGTGTTTACTCTTACAGCAAGCTTGTGAATCTAGGTGT TGGTGCTTCCGGAAGTGCTCGTGGAGATTGTGTTTACACTACTGTTAGTTACTTCAATATGATTCATTTCCATTGTCACCAAGAAGCCAAAAGAGCAGAT GCTGCCTTGAAGAATCCTAAGAAAGAGTGGGAAGGGGCTACCCTTAGAAATAACGAATCTCTCTGTAATTCTTTATTCCCTGTCAAAGGTCCATCTGTCC CACTTGCACAGTATATTCGCCATGTCGAACAGTATTGGGACAACCTCAGTGTTCTTGGACGAGCTGATGGAAGCAGGCTCCGTCTGCTCACTTATGACAT TGTTCTGATGCTGGCTAGGTTTGCAACAGGAGCATCATTCAGTGTAGATTGCCGAGGTGGAGGACGGGAAAGCAATTCTCGGTTCCTCCCATTTATGATC CAAATGGCACGCCATCTCCTTGATCAAGGAAGCCCCTCCCAGCGTCGAACAATGGCCAGAGCTGTATCAGCATATATAACCTCTTCCACATCAGATGTCA GACCTTCTAGTACTTCTACTCCATCTAACACCCAATCTACACCGGGGACGGAAGAAACAGTCCAATTTATGATGGTGAACTCACTTCTATCAGATTCTTA TGAATCCTGGCTGCAGCACCGCCGTGCTTTCCTCCAGCGTGGAATTTACCATGCATACATGCAGCATACACATGCTAGATCACCAGCTCCTCCATCATCC ACATTGGATACTGCTCAGAAAATGGAATCTGGCAGTACGAGCCAAAGTGATACTGGAGAAACAGGGCAGAATGATGAGCTGTTGTCTATCATCCGACCAA TGCTTGTTTACACCGGCTTAGTTGAGCAGCTACAGCACTTCTTCAAGGGCAAGAAATCCACAAATGCTGCATCTGGAAGAACTGAAGGGGTTTCATCTAC AACACAAGGGGAAGATGAAAGTGGGACCTTGGAAGGCTGGGAAATTGTTATGAAAGAACGACTCTTGAATGTGAAACAGCTTCTCGGATTCTCAAAGGAG ATGGCATCCTGGCTTGATGAGATGAATTGTGCTAGTGATCTGCAGGAAGCCTTTGATATAGCTGGTGTTCTACCCGAGGTGTTTTCTGGCGGGTTCACCC AGTGTGAAGACTTTGTAAATGCTGCAATTAATGCAGGGAAAAGCTGAAAGATTGAAGATAATGTTGTATCTTGCTTTTGATATTCAAAGATTAAGATCTT GTGCTAAAACATGAAGCCTATCTTATAAAACCCTATCCAATTGCTTGGTACTTCAACAGAAATGATGCTTATCAGTGATCACAGGTCAATATTTATTGCA TACAGATGATCAAGTTTTCCTCTAGTTTCTTGGCTGGATTTAATATCATTTAGAGCATTGTTTAGTTTGAGTCAATTTCATCTCAGTTAATTAGAGGACA CTTCTAAGGTCTTAGTTTTTTTTGTTCTAACCAATTTAGGTCCATGAACAACCCAATTAAATTCTACCATCAATAA
• Tissue: flowers
• Gene name: LI_gene_85574;
• Additional information: details;

Expression of Ll_transcript_115608

FPKM

• FPAB: 10.3
• FPNAB: 13.7
• LF1: 9.2
• LF2: 8.7
• LF3: 7.8
• LF4: 6.8
• UF1: 8.1
• UF2: 8.6
• UF3: 8.4
• UF4: 7.9

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_115608

• Blastp: Auxin transport protein BIG from Arabidopsis with 75.52% of identity
• Blastx: Auxin transport protein BIG from Arabidopsis with 75.67% of identity
• Eggnog: Ubiquitin protein ligase E3 component n-recognin 4(ENOG410XPP8)
• Kegg: Link to kegg annotations (AT3G02260)
• CantataDB: Link to cantataDB annotations (CNT0002836)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452981.1)
• Pfam: E3 ubiquitin-protein ligase UBR4 (PF13764.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;