Ll_transcript_115578

• Id Trinity: FTRINITY_DN59399_c3_g1_i5
• Name Transcript: Ll_transcript_115578
• Sequence: GAACAATAGGTTAATAGAGTGGCCCAACACTGTTAAGAAAACAACACCAACATTGAGTTTATTTATTTAGGTTCACTTCGTTTCGTTTCTTCACTAATTC CTCTGTTTCTTCAAACGCCAACCTTCAATGGCGACACTATCTCATGCTCAAGCTGTCAAGTCTCTCAACAAATCACCTGGTCGACGTCGTTTTGTTTTTA AGTCATTCAATGATAGAGTGAATGATATTGATATTAACGTGTATCGAAGTCTTGATAAGCTTAAACCTGCACCCTCAGATGGTTCCTTTTTCAGAGATTG CCTTATGGAATGGAGGGAACTGAACACTGCAGAAGATTTCATATCCTTGTATGAAGAAATTATGCCTTACACACAAACATTGCCTTTGGTGCTTTTGCAT AAGGAATCTTTAATCACAAAACTTCTTTCTAGGTTACATATGAAAGCAAGGTTATCAGTTGATGCAATTCTCAGGTTGATTGCAGCATTATCTAGAGATC TCCTGGACGAATTTGTTCCGCTTTTTCCAAGAATTGTTGATTCTTTAGTATCTCTTTTAGAAAGTGGTGGTGATAGGGAGCCGGATATCATTGAGCAGAT TTTCACTTCGTGGTCATGTGTAATGATGTATCTGCAGAAATATTTAATAGACGACCCATCAGTGGTGCTCAAGGTCACTGAAAAATTGAGATATTATCCA AAGAAGTATGTCCAGCAATTCATGGCAGAGGCAATGTCATATGTTCTGAGAAATGTCCCCAAGGATGAGCAGCTTGAAAGAGGAATTGGAATTGTCATGG ATGAAGCAGTGAAGGATCCATCTTCCTGCATAGAATCAGTTGCCGAATTGCTTTATAACATTATGAAAGGTTACTCGTCGAGGTTCCATTCAAAATCAAA GCGTGTGTTAAAATTATTGACAAGTGAAGCATTCTATGGGAATGGTGATATAGCTAACCAAGATTCATGCACCATTTTGAAAGTTGTAAAATCTGTGTTT AAGAAATTATGCCAGGCAATGGAACCCAAAGAGTTGAATTTGGTATGGGATTGCTTATATGAGGAAGTGAGTAAAGGTGTTAGTACTAAAAACTTGCAGC ATTTAAGATGCATTTTATCAGTGCTTGTCTCTGCTGTGAAGGTGCAAAATGGGCAAAAGGTGTCTGATTATGAGCCTTTGCTTGAACTTGTAAGGGAGAT TGTGCAGACATTTATCACACCTGGTGGTATTGAGTCTCAAAAAGATTCACATTTAGTTATCGATAAAATTTTGAAATTAATGTTGGCCATTCTCAATGGG CTTTATAGTTGCAGTAAGCTTATGATATCACATTGTGCTCTCCAGTGGGCTCCAATTTTCAAATTACGGAGTCCAAGTTTGGCGCGTTTCATTAGAGAAT TGCTAGAGAAGGAATTTTGTTTACTCCCTTTCAGGAGCAATGTTATAAGTGCAATAAATGATTTATTGGAGATCACAGAGGAAGAAGCCATACATTTGTT ACAATTATTCTTTGAGAAAATACAAAACTCAGACTGTGTGGATGGAACAAGTGCAGAACCACTTGCTAGTATACACAATCGTTTGAAAGGGACTATTCTC CAAATAAAAAATGATATTGAACGTTCTGATGTGTCGTGTCAAATCGATGAAGGAAAGTTGGCAGTACTATGGGGAGCTGTGAGCTGCTATTCTTATAGGT CTATTGTTGAGTCCGATTCATCCTTGTTGGTGGATCTTATGCATACTGTAGACAAGCATCTGATAGATAATGCTGACGACATTGCAGACACATCTAAAAA AACTTGGGAAAGCATTATAGGTGCTGCACTAAGCTCTTATAACCGACTTTACAGGGATGATAAGTGTAAAGATGATGAAACTGGAACATTTCTAAGTCTT GGAAAACGCTATAAATCATCTCCCCAAGTGTTGTTAGCCATTGCTGATTATTTGGAACTCAAATATGGTTCCTGTTTAGAAGACACTGGGTGCTGTAGAA TGTATCATCCAGAACTAGAAGAAAGGGTTGCAGACACAATGGCAACTTTTGCTGATAATTTGCACCATTTGGACAAGGAGATCCGCATTTCAACTCTTAA AATACTTTGTCACTTCAAACTTTTGGATGGGGACAATTCTTCACTGGATCAACCATCTAAGAAGAAAAGGAAAACTGAAATATCTTCAGCTTCCAATGTG GATTCCACAGGAAACAATGTTCTGCTGCTCCTCCTCTCTATTGAAACAACCCCTATTTCAATTTCTGTAGACATAAGCATTAAGCGGTTGATTTCCAAGA TACAGACGGATCTAACTTCTGGGAGGATTCCTTCTGTTTATGTGACTCTTGTTTTGAATGGATTGTTTGGCATATTGAACAATCGATTTAGCCTCCTCTG GGACCCTGTATTAGAATGTATTGCTGTCTTGATTAGGCTACATTTTTCACCTGTTTGGAATAAATTTATTGTTTATCTGGGAAGGTGCCACTCAATATTG CAAACATCTCGCGAGTTGCTCAATGGTCCACTGCTTCATCAGCCAACCGGTCTGCGTGATTGTTTCAAATCATTTGTCAGTCATGCATCGGATAGCACAC CTTCTGTAACAGTGTTGACATTACTGTTGAAAGCTCTACAAAAAGTTCCAACTCTTATTGAACCTCACTCGCAGCAGTTTATTACTTTATTTTTGAAGTT TTTAGGATACGACACTGATGAACATGAAAGAAATTGCAGTGTGGGATTATTTGATTCTCAAACTTGTAAAGGCAAGGAGTGGAAGCTTGTCTTGAAAGAA TGGTTAAACTTGTTGAAGCTGATGAAGAATCCCAACTCATTTTTCCGTAGCCAATTTCTCAAGGAGGTTCTACAGAATAGGCTTCTAGAGGAAAATGATC CTGAAATACAGATGAGAGTTCTGGATTGTCTGTTAATCTGGAAAGATGATTACCTTATACCATATAATGAGCATCTGAGAAATTTGATCAGTTCCAAAAA TTTAAGGGAGGAACTAACCACATGGAGTTTATCCAGGGAATCTAACATCATTGAAGAATGTCACCGGGCTTATGTTGTGCCATTAGTTATCCGTCTGTTG ATGCCAAAAGTACGAAAGCTGAAAGGACTTGCATCACGAAAGAAAGCAAGCATTTGTCATCGGAGAGCTATTCTGAGTTTCATAGCTGGACTTGATGTCA ATGAGTTGCCACTTTTCTTTGCATTACTGATAAAGCCATTGCAAATAGTAAAAGAAACTGATGGAACTACTAATTTGTTTTGGGCCTTACCTAGAGGTTC CATTAATGAATTTCAAGCATCATCTTTGTTAGAATGTTTTACTTTGGACAACATAGAAACCCTATCCTGGAAAAAGAAATATGGTTTTTTGCATGTCGTT GAAGAAATTGTTGGAGTTTTTGATGAACAGCACATTAGGCCTTTTCTTGATCTATTGGTGGGTTGTGTTGTTCGTCTGTTGGAGAGTTGCAGTTCGAGTC TTGACAATACACAATTGAATGCCACAGATCAAAGCAACAACTCTACCACAAACTCAAATTCCCTGAATGGCAATTTGAAGCAGCTCAAGGATATGAGATC TTTGTGCCTTAAAATTGTTTCCCTTGTTCTCAGTAAGTATGAAGATCATGACTTTGATGCTGATTTGTGGGACAGATTCTTCTCCGCAGTGAAAGCGCTG ATTGATAAATTCAAACAGGAGGCTGCTAGTAGTGAGAAGCCAAGTTCACTATTATCTTGTTTTGTGGCCATGAGTGCAAACCAGAAACTTGCAGCTCTGT TGTGCAGGAAAGAGAGTCTTGTACCTGATATATTTTCAATAGTATCTGTGAAGTCAGCTTCTGATGCTGTTATATATTTTGTTCTAAAGTTCATTGAGAA CTTGTTAGACGTTGACAACCAGTTGGATAATGAAGACAGCCCTGTTCAGAGAGTTTTACATTCTAACATTAAATCACTCATGGCTAGCATGTGTTGTTTA TTTGGAAGTGATAGTGCAGCTAAGAGAAAGCTGATCAAGTCTCCGGGGGAGACACTGATAAGAATTTTCAAATTCCTTCCCAACTACGTCAAGGAGGCAG AGCTGGCAAATCACTTCGTGGACATATTGCTTCTGTTTTTTGATAAGAAAACCCCAAATTCTGATATATGTATTGAAGCTTTGCAAGTCATTCAAAATAT CATACCAATATTAGGACATGGAAGTACCACAAAAATTCTAAGTGCTGTTTCTCCTTTATATATTTCGTCTGAGGCGGACATGCGGTTAAGGATATGTGAT CTCCTTGATGCTCTTGTAGCAACTGATGCATCAGTATTCGGAGTGGCAAAACTTCTCCGTCAGCTGAATGCGACAACTTCTTTGGGTTGGCTTGATCATG ATACTATTTTGAATGCTTACAGCAGCATTAATACTGATTTCTTCAGAACTGTTCAAGTTGAACATGCATTACTTCTTTTATCTCACTGTGTCCGTGACAT GTCATCAGAAGAAACAACTTTTATGCGTAGTGCCTATAGTTCATTGCTATCTTTTGTTGAATTTTCTGCCGTCATCCTTTGCCAAGATGGAAATAGTGAA CAAGAGTTGTCTATCATAAAAAATACTGATGATTGTTGGACAAAATCATGCATCCAGCGTATAGCAAAGAAGTTTCTCTTGAAGCACTTGGCTGATGCAA TGGATGGATCACTTTCTGTTATAAAGGGATGGACAAGATTGTTACATCAAATGGTATTGAAGCTTCCAGGAGTGTCAAACCTTAAGTCCCTCACAGTCCT GTGCAATGAGGACAGTGAAGTAAATTTTTTTGACAACATAGCTGACTCAGTGATTCGAAAGAGAGTGAAGGCATTGGCATTGTTTAGGAACATTATCAGC ACAAACAAGTTATCAGAGTTCATCACTGAGAAAGTCTTCATGCGCCTTTACTTCAACATGTTGTTTGATGAGAAAGAAGCAAAGGTAGAACATTTGAAAA ATGCATGTGTAGAAACTATTGCTTCTGTAGCAGGTCAGATGGGATGGAAGTCATACTACGGATTATTGATCAGATGTTTCAAGGGAATGTCCACTGCTCC AGACAAGCAGAAAGTGTTTATCCGCCTGATTTGCTCTATTTTGGACAAATTTCATTTCTCTGAACTTTCTTACACCGAAGGGCCTAAGCAAACTTTAGGC GGGGTTTCTGATATGGGGATTTCTGAGACCGCTTCAGCAATCTTACGCCGCTGTGATACTTTTGATGTGAACACAGAGATGCAGACTTGCCTACAGAAAG TTGTGCTTCCGAAGATACAAAAGCTGCTTGATTCTGATTCAGAAAGGGTCAATGTGAATATCAGTCTTGCTGCATTGAAACTGCTTAAGTTACTTCCGGA AGCTGTAATGGACTTGTATCTTCCAACTATTGTTCGTCGCATTTCAAACTTCTTAAAGAATAATCTAGAAAGCATTCGTGATGAAGCTAGGTCTGCTTTG GCTACTTGTTTGAAGGAACTTGGATTGGAATACTTGCAATATATTGTCCAGGCTATGCGTTCAACCTTAAAGCAAGGGTATGGACACGTCTTAGGATACT CGCTTAATTATATTTTGTCCAAGTGT
• Tissue: flowers
• Gene name: LI_gene_85764;
• Additional information: details;

Expression of Ll_transcript_115578

FPKM

• FPAB: 4.4
• FPNAB: 6.2
• LF1: 6
• LF2: 5
• LF3: 6.1
• LF4: 2.2
• UF1: 3.1
• UF2: 5.6
• UF3: 5.4
• UF4: 1.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_115578

• Blastp: Small subunit processome component 20 homolog from Homo with 21.46% of identity
• Blastx: Small subunit processome component 20 homolog from Homo with 21.86% of identity
• Eggnog: UTP20, small subunit (SSU) processome component, homolog (yeast)(ENOG410XSRE)
• Kegg: Link to kegg annotations (27340)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438350.1)
• Pfam: Down-regulated in metastasis (PF07539.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;