Ll_transcript_520113

• Id Trinity: TRINITY_DN23200_c0_g1_i1
• Name Transcript: Ll_transcript_520113
• Sequence: CGAGAAAAGAACGTGACAATTCCATTTGAAGCATATGAGAGTGATAGGATATTAGAGATAAACAGAATGAAACTCTCTTGTTCAACCCTACTACCCAATT TCCTCAATCTTCAAACCACAAATTAGATACCCATTTTTCAATTTTCATAAAGACAATACCTTTCTCAAATTTCATATACACTTTCTACTTCATGGTTTTG TAGTGGCAGCACCAACAATTTTCCTCCATCTCTTCACACAGACACAGCAAAAAAGGTTTCAACTTTTCATTGCAACTGAGGTTTTTCCTTTACCTGGTTC CCCTAAATTTGTTCAAAAGATTGAAATTTTTGTGGGTTTATTTCGGGTTTTCCTGTAGTGGATTTTAAGGTTTGTTTGAAAGGGTTTTAGCAGATATTAA TATTGTCTTGTCCCATTTGAAGGAACAAGTTTGAATAAGTTTTTGTTTGTTTTTGTAATAGACTTGTGGTTAAAATGATGTCAGCAAGGTTTCTTGTTCT TGTTGGAGAGTCATTGCCCATGAGAAGGGTTTTGGTCTCTTCTAGGAATGCTTGGTTTCATAGCAGTGTCCATTGTAAGAATCAGGTTGAACCCCGAAAT GGTTCCCTTTCGCTTTCAAGCATTGGTTTGAATAGTGAAATTGACCCCAAAGACAAAATCCAATCAGATAAGGTTGTTAAGCCATTGGGTTCCTCTTCGG AATCCCTGAAGAAAAAAGGAAAACTTGGTCACATCAATGAGAAAAAGGCGGTTCAAGTTAGACAGAAACAACCGGTAGAGTCTGCTCCCTTTGCTGCAAA TTCATTTTCAGAACTTGGTGTCCCACAGGTACTGATTGAGAGGCTAGAAAATGTGGGGTTCAATGTTCCGACTGATGTTCAGTCTGCTGCGGTTCCTACC ATCCTGAAGAAGCATGATGTGATAATTCAGTCGTATACGGGTTCAGGGAAAACATTGGCTTATCTACTTCCTATACTCTCGGCTATTGGCCCGCTAAGGA ATAGAGATTCTGAAGAGAATGGTGGTGATGGTGGGAAGAACAGCGGAGTAGAGGCGGTTGTTGTTGCTCCCTCTAGGGAGCTTGGAATGCAGATAGTGAG GGAGTTTGAGAAGATACTAGGAATGGAAAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGTACTAGGCAGGAAGAAGCTCTTAAGAAAAAT AAACCTGCTATTGTCGTTGGCACACCTGGTAAGATAGCCGAGCTCAGTGCATCTGGGAAACTTCGCACTCACGGCTGTCGTTATTTGGTATTAGATGAAG TTGATGAACTCCTTTCATTCAATTTCCGCGAGGACATGCACCGGATAATTGACCACGTAGGGAGGAGAGCAGGTGCAGGTGCAGACCCAAGTTCTAAAAG GATCGAGCGTCAATTGATTATGGTATCTGCAACTGTGCCGTTTTCTGTCGTAAGGGCAGCGAGGAGCTGGGGTTGTGAGCCACTTCTTGTCCAAGCTAAG AAAGTTGTCCCACTTGAATCTATCCCTCCTCCTAAGCCTGTCATTCTGTCAGAGTCTTCATCCGGCACAAGTTCTAAGCCGACTACGCCATCTCAGGCAT CAGTAGAGAGCCTACCTCCTGGATTGAAACACTATTACAGTGTAGCGAGGTTGCAGCACAAAGTTGATACGTTGAGAAAGTGTGTTCATGCATTGGATGC CAAATATGTAATAGCTTTCATGAACCACACAAAGCAGCTAAAGGATGTGGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCAGAGTTACATGGGGAT CTCGGGAAGCTTGCTAGGTCGACAACTCTAAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAACGAATTGTCAGCAAGGGGTCTGGATGTGC CAGAATGTGATCTTGTGGTTAATATCGGGTTGCCCACAGATTCAACTCACTATGCACACCGAGCGGGCCGAACTGGTCGTCTCGGTAGGAAAGGTACAGT GCTTACCATATGTGAAGAGTCAGAATTGTTTGTTGTGAAGAAAATGCAGAAGCAGCTTGGAATACCAATAGCATGCTGTGATTTTACTGATGGAAAGTTG CTTGTCACCAAAGAAGAGAAAACACTCAGCACTTCTATATGATAAGGTGTTATATTTTTGTAACTTGTTTAGTTGGCAATGAAATTTTCATGCTTCTTTG TTTTATTCTTTTTTTAGGTTTCCTTTATCTCCCTTGTTTTTATTTTCATATGCATTAATGTTATATTTAGGGGATTGCTTCTTACCCATTTTGCTTATTG CAACTACTACTTTGGTGCACATTTGAAGCATGACATGTAGTTCACATTTTCAGTTGAATATGAGAAGTGTATTCTTATAAGGGTATTCCTGTATTTTAGT TCCACCCATTTCAGTGAAACTAAAATATGTTACTTTTAAG
• Tissue: pods
• Gene name: LI_gene_123298;
• Additional information: details;

Expression of Ll_transcript_520113

FPKM

• PAB: 3.1
• PNAB: 10.2
• PS1: 7.7
• PS2: 3.5
• PS3: 6
• PW1: 6.2
• PW2: 7.2
• PW3: 5.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_520113

• Blastp: DEAD-box ATP-dependent RNA helicase 47B from Oryza sativa with 61.85% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 47B from Oryza sativa with 61.2% of identity
• Eggnog: purine NTP-dependent helicase activity(COG0513)
• Kegg: Link to kegg annotations (4332087)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456348.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;