| Id Trinity | TRINITY_DN35299_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_322229 |
| Sequence | AAGAAATCCATGTTTTCACACTTGGTCTTGGATTAGAATAAGAAATTTAACTTTGATATTGTTTGGAAATAACTATTGGAATTTGTAGAGGTTCTTTGTT GAAGAAGAGCAAAATAAGGGCAAAAATGTGGATATGGACATGGACATGGGACTGAATGAGGACGAGATTATGACTTGTATTAAGCATGAAACATTTGAGT CTACGAAGGAAGAGTGTTTAGAAAATAAAGAAGCTTGCAGCATGTGCCAGGTGATTTACATGAATGGGGAAAAACTTGGAAGGTTATATTGCTTACATAA ATTTCATATGGAATGCATCAAATATTGGCTTTCCAAGAAGAACAAATGCCCCGTGTGCAAACGAAGAGCATTAATAGCTAACGACGATGATGACAATGTT AATAATGCTACTGATCTTGATGATGATGATGGTGATAGTGTTACTGATCTTGATGATGGTTATGATTGTGATAATAATGATGATACTGATAGTGATATCG AAGATGAGTAGAATGTCTCAAATTCAGAATAAATGTTTTGTAATTGGTTTAAATTCAAATATACCCTTTCTTATTTGATTATGAAAATGTAGTAGATAAA TATTATTGTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_127074; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_322229
| Blastp | Probable E3 ubiquitin-protein ligase HIP1 from Oryza sativa with 40.51% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase HIP1 from Oryza sativa with 40.51% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (9272591) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019447288.1) |
| Pfam | Ring finger domain (PF13639.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |