| Id Trinity | TRINITY_DN35444_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_495713 |
| Sequence | TACCAGCATTTCACCAAAATACTAAAAAACCCTCTGCCACCATCAACCTTAACTGTCGGTGACGCTTCTTCAACTGTTTTTCCTCGTTCTCCGAGCTTGT CGGAGAAATCAGTAGTGGCGGCGCGTCGAACAATTTCGTCCTCACCCACAATGCAGCTCCACCGTGTATTCGCGGTGTTTTTAAGCATGTGCTTTGGAAT TGTGCTAGTAAGCGCAAAAGGACTGCCTCACCATGATGTTATCGACTCACATTGGTATCCCGGCACCGCCACATGGTACGGCGAACCAGAAGGAGATGGT AGCACAGGAGGAGCATGTGGATATGGTACACTGGTGGATGTGAAGCCATTGAGGGCAAGGGTAGGTGCGGTGGGGCCGTTTCTGTTCAAGGGCGGAGAAG GGTGCGGGGCTTGCTATAAAGTGAAGTGTCTGGACAAGAGCGTATGCTCCACGCGCGCTGTGACGGTTATAATAACGGATGAGTGCCCTGGGTGCCCTTC TGACCGAACCCACTTCGACCTTAGTGGCGCCGTCTTTGGGCGAATGGCTGTTGCTGGTGAAAACGGTCAGCTAAGGAATCGAGGTGAAATCTCAGTCATT TATCGAAGAACTCCATGCACATATCCTGGCTATAATGTTGCCTTCCATGTTAATGAAGGTTCCACACCTTTCTGGCTGTCACTTCTGGTAGAATTTGAGG ATGGAGATGGGGACATTGGGTCCATGCATATACAAGAAGTATGCACCTTTCTTCTTTTGTTATTATTTATTTCTTTATTATCCCATTCCCAACCTATTAT CTATATAAATAAGAATAATAAAATGCAGAAAGATCTGAAGCATAAGAGTGAGAGAGAACCCTGAACTAATTTAATAGCCGGAAGGAACATATACCTTCTT TAATTAAAGTGGAGCAGGGTAGAATCCTAGTGATAATTTGCATGTGAAAATATGTGATGAAACATGTTACCAATTGTGCCTGAAAGGCACTTCTGCCTAA ACGTGCATAAAAGCATTATGGTTGGCCAGTGTGGACAATTCCAAATGTTGTGGATGTGTCTCCCTAAGTCACGTGCCAATGCCACTTTCCAGCATTTTCA TCTTTTACACTTGTAATTTAGATTCAAGAGTCTTTTCCACACAGACTGTTACTATCCTTATAATTGTGCCAATTGGTGGAAGATATATCTATTATTCCAA ATCATGTTTCATATACTCTTTTATGCCAATAAAAATATGTGATGACAATTAAAAATTTTAAATCTTCACTATTTTTATTATTTTTGTATCATGATCATTA AACAAGACAATATATGAAATAAAATTTAGGACAGCCAATATGGGTAATGCTCCTATTGTGGTGCTCTTCTCCAATATCTTCTAAATTCAAAGCATGTGTT ATTCTAACTCTAGACAATTGCATTCATTATTTTTTCCAAGGAAGCATCTATGTTATATATTTTTTGATACTATTGAAGGTATCATTTCATCTTTTGTATA AAAAATTATTCTCTTTCGAGATTCAAAGTTGCCTCTTTCGACCTTGAGGATCCAATAGAGAGCCTTACAACACTATACCAATGTCTTACCCAAAAAGTGT GACAACTTATAATTTTAAATATAAGTAAAAGTGTCATTAGATATCATTTTTGTAGATGAAATATAATTAATAAAATAATGAGACTAATTTTGTTTTATGG TGATTGGATATTGGTATTTGCAGGCAGGGTCAAGTGAGTGGCTGCAAATGAATCATGTATGGGGTGCAAGTTGGTGCATTACTAGAGGACCTTTGAAAGG ACCTTTCTCTGTGAAACTAAGCACATCTACTGGGAGAAGTCTCACTGCTAGAGATGTTATTCCAAGAAATTGGTCTCCAAAATCTACTTATACTTCTCGT TTAAATTTCTTCCCTTAGCCTTTTCAACTTTACAAGCACCACCAAGTCACTTCCCAAAGGGACCAATTACTTAATAAGCAGTTAAAACAAATTTACCAAG TTATTTACAGTGGTATCATTACCATTTTTATTATTATTTCTCTTGTTTTTAGTATGTCTTATCTTTTGTCGTGTGCAACTGTTTCTACTAGATGTTATGT TATTATGTAGCCTTCTCCAAAAAGGAGAGAGAGCGTAGCGTGTAGTGTGTGAATTATAAATGTGTGTACTGGGCCGCTAGGCTTTGAATTAATGAATTAA TGAAGTAATGAAATTTAGATCTTGAACTTGATCATTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_127201; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_495713
| Blastp | Expansin-B3 from Arabidopsis with 71.07% of identity |
|---|---|
| Blastx | Expansin-B3 from Arabidopsis with 71.07% of identity |
| Eggnog | May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity)(ENOG410YA5Q) |
| Kegg | Link to kegg annotations (AT4G28250) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429631.1) |
| Pfam | Lytic transglycolase (PF03330.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |