Ll_transcript_478867

• Id Trinity: TRINITY_DN35573_c0_g1_i1
• Name Transcript: Ll_transcript_478867
• Sequence: GTTAGAGTAGTTGTACCCTATCACTCTTCTCCAATGATGATTCTTACTCGTTCTTCTGCTTCCTTTCTTCAAAACCCACAAATTCGTTTCTTCAACCATT CTCTTCTCAATCCTACTTCACCTTCTTCTCTTTTCAAATCACTTTCCTTCTTTTCTCTCTCCATAACTCAAACCAGAACAAATTTTTCAACCACACCCAA CAACGTTGTTCCAACATCACAAGATTCAAATGGAAAAGACACTTTCTTTGCTGAAGAATCTGTTTTTTGGAACTCACTTGGTCTTTCTGATACTATTTCT CGTTCCCTCTCTAACATTGGTCTCAATAGACCCTCCCTCGTTCAGGCTTCTTCTGTACCAGCTGTGCTGTCAGGGAAGGATGTGATAATTGCGGCCGAGA CTGGCAGTGGCAAAACATACAGTTACCTAGTTCCTCTAATTGATAAACTACTGGGTACCCATGAAAGTTCTCTACAAACTGTATCTGATCAAGAAGTGTC CTCAACCCGTAAAGTTCTGCTCGTTCTTTGTCCAAATGTACAACTATGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTGGTGACAACGGTGAACCG ATTGTTAGTGTGGCAGCCATTTGTGGTAGACAGGGATGGCCACACCGTGAACCTGATATCATTGTCACGACACCTGCTGCTCTTCTTAATTATGTTGACA CTGATAGAGACCGTCGCTTGGAATTTATGCATGGTGTTAAATATGTGGTTTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAAT CCGCCTGATAAACTTGCTGCGCTTTGATGAAAAACTCGTGTCTCAAGCAAAAGAATCAGCAGCAGAGTTGCCACAGGAACTAGAATCTTCCTTGTCATCC CATGATGCTTTGGAAGTTGAAGAGGAAATTGAAAATGAAGCCATCTCAGAAGAGGATGATGATGATGACAATGAGGAAATTCCTGATATTAATAATGAAG TTGAATCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAAAACTTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAA GAAAACAGCCGGAGGAATATTGAAACATATGTTTCCCGATGCTAAGTGGGTTAGTGGAAACTACCTTCACTGTCACAATCCAAGATTGGAGCAAAGATGG ATTGAAGTTACAGTTGATACACAGGTGGATGAACTTATAAGGGCCGTGAAGTGGGGTTTCAGAGCTGAAGATTTGGACTCTGCTGGTGGCATTCACAGAA CAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCGAAGCTATTGCACCACTCTGGGATTGAATGTTTACGTTATCATAAGGGTTGCACATT GGAGGAGCGAGCACAGACCTTAGTTGACTTCCACGAGAAAGGTGGTGTTCTTGTGTGTACTGATGCAGCTGCTCGTGGTGTTGATGTTCCAAATGTCTTG CATGTTGTTCAGGCAGATTTTGCTACTTGTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGAGTTGTTACTAGCATGT ATACTGAATCCAACAGGGATCTTGTTGATGCAGTTCGTCGTGCCGGGAAACTTGGTCAACCCGTGGAGACCGCATTTAGCCGGAAAAGGGGCTTCCGGAA CAAGCTAAAAAAGAGAGCTGCTGCAAACAAGGTCAGAGATTCAGCAACTATTGAAGAATATTCTAGCATAAGAGTATGAGGTTATGCCAAATTGAAAAGC ACCACCAAATGACAGAGTGAACAACATTATCACACTTACATGCCTCAAATGTCACAAATGCAGCACCAATGGAAAAGTCATATGTGTTTGTCAAATGGTT AAATATCCAAAGGGTAATGTGTTCATTATTTTCTGTATATGTATGCTAATAAAGTTGATGATAGTGGGACAAATTTTCAGATAGTTATTATACTTGGTTG TTAATTTGTTATACTTATAATTACCATGTAAATTTTATTTTCCCTATCATATTTTTTTGTTAGTTATATTTTAACAGATAATTTTGAAGCAACAAAATCT ACCAAAGATTATACATGTATTATATGCATGACCATATATTGTTAGTGGTAGTAGTGGG
• Tissue: pods
• Gene name: LI_gene_127314;
• Additional information: details;

Expression of Ll_transcript_478867

FPKM

• PAB: 1.2
• PNAB: 15.2
• PS1: 7.5
• PS2: 6
• PS3: 7.6
• PW1: 12.5
• PW2: 9.6
• PW3: 6.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_478867

• Blastp: DEAD-box ATP-dependent RNA helicase 22 from Arabidopsis with 60.12% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 22 from Oryza sativa with 57.91% of identity
• Eggnog: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)
• Kegg: Link to kegg annotations (AT1G59990)
• CantataDB: Link to cantataDB annotations (CNT0001390)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439193.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;