Ll_transcript_478868

• Id Trinity: TRINITY_DN35573_c0_g1_i2
• Name Transcript: Ll_transcript_478868
• Sequence: GTTAGAGTAGTTGTACCCTATCACTCTTCTCCAATGATGATTCTTACTCGTTCTTCTGCTTCCTTTCTTCAAAACCCACAAATTCGTTTCTTCAACCATT CTCTTCTCAATCCTACTTCACCTTCTTCTCTTTTCAAATCACTTTCCTTCTTTTCTCTCTCCATAACTCAAACCAGAACAAATTTTTCAACCACACCCAA CAACGTTGTTCCAACATCACAAGATTCAAATGGAAAAGACACTTTCTTTGCTGAAGAATCTGTTTTTTGGAACTCACTTGGTCTTTCTGATACTATTTCT CGTTCCCTCTCTAACATTGGTCTCAATAGACCCTCCCTCGTTCAGGCTTCTTCTGTACCAGCTGTGCTGTCAGGGAAGGATGTGATAATTGCGGCCGAGA CTGGCAGTGGCAAAACATACAGTTACCTAGTTCCTCTAATTGATAAACTACTGGGTACCCATGAAAGTTCTCTACAAACTGTATCTGATCAAGAAGTGTC CTCAACCCGTAAAGTTCTGCTCGTTCTTTGTCCAAATGTACAACTATGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTGGTGACAACGGTGAACCG ATTGTTAGTGTGGCAGCCATTTGTGGTAGACAGGTAGTGACATTTTATTTTTCGTTATCATTGTGCAGTTATAGCTTTATATGGTATTTGTGTCTGCTAC ATTATCTTCCTGGTTGTTTCTATATTAGTCTTAGCTTTCTTCTCAAATTTTCAGTGTCTGTTTTATAATACTAAGAATCTTTTTGACCCAGGGATGGCCA CACCGTGAACCTGATATCATTGTCACGACACCTGCTGCTCTTCTTAATTATGTTGACACTGATAGAGACCGTCGCTTGGAATTTATGCATGGTGTTAAAT ATGTGGTTTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTGCGCTTTGATGAAAAACTCGTGTC TCAAGCAAAAGAATCAGCAGCAGAGTTGCCACAGGAACTAGAATCTTCCTTGTCATCCCATGATGCTTTGGAAGTTGAAGAGGAAATTGAAAATGAAGCC ATCTCAGAAGAGGATGATGATGATGACAATGAGGAAATTCCTGATATTAATAATGAAGTTGAATCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAAAA CTTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCCGGAGGAATATTGAAACATATGTTTCCCGATGC TAAGTGGGTTAGTGGAAACTACCTTCACTGTCACAATCCAAGATTGGAGCAAAGATGGATTGAAGTTACAGTTGATACACAGGTGGATGAACTTATAAGG GCCGTGAAGTGGGGTTTCAGAGCTGAAGATTTGGACTCTGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGG CGAAGCTATTGCACCACTCTGGGATTGAATGTTTACGTTATCATAAGGGTTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGACTTCCACGAGAAAGG TGGTGTTCTTGTGTGTACTGATGCAGCTGCTCGTGGTGTTGATGTTCCAAATGTCTTGCATGTTGTTCAGGCAGATTTTGCTACTTGTGCTGTAGACTTT TTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGAGTTGTTACTAGCATGTATACTGAATCCAACAGGGATCTTGTTGATGCAGTTCGTCGTG CCGGGAAACTTGGTCAACCCGTGGAGACCGCATTTAGCCGGAAAAGGGGCTTCCGGAACAAGCTAAAAAAGAGAGCTGCTGCAAACAAGGTCAGAGATTC AGCAACTATTGAAGAATATTCTAGCATAAGAGTATGAGGTTATGCCAAATTGAAAAGCACCACCAAATGACAGAGTGAACAACATTATCACACTTACATG CCTCAAATGTCACAAATGCAGCACCAATGGAAAAGTCATATGTGTTTGTCAAATGGTTAAATATCCAAAGGGTAATGTGTTCATTATTTTCTGTATATGT ATGCTAATAAAGTTGATGATAGTGGGACAAATTTTCAGATAGTTATTATACTTGGTTGTTAATTTGTTATACTTATAATTACCATGTAAATTTTATTTTC CCTATCATATTTTTTTGTTAGTTATATTTTAACAGATAATTTTGAAGCAACAAAATCTACCAAAGATTATACATGTATTATATGCATGACCATATATTGT TAGTGGTAGTAGTGGG
• Tissue: pods
• Gene name: LI_gene_127314;
• Additional information: details;

Expression of Ll_transcript_478868

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0.3
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_478868

• Blastp: DEAD-box ATP-dependent RNA helicase 22 from Arabidopsis with 64.71% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 22 from Oryza sativa with 58.1% of identity
• Eggnog: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)
• Kegg: Link to kegg annotations (AT1G59990)
• CantataDB: Link to cantataDB annotations (CNT0001390)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439193.1)
• Pfam: Helicase conserved C-terminal domain (PF00271.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;