| Id Trinity | TRINITY_DN35611_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_358560 |
| Sequence | TAAGAAAACACAAGCCTATGTAGCAAGGTATGAGGACCCGACCCAAATGATAGAAACGCGCTTACCTAGTTACCCATACAAACCGAAGTGTGCGACTGTG TGAGAAACGGAGCAAAGAAGCCTTCATTTCAATGTATCGTTACTTCTCTTCGATTTGCCATGCCTCTCGATCTTCTTCTCTCATTTCACGCTTTGCACCT AAACCCTCGCTTCCCACTTTAAGGCTTCATTGCTTCTCATGGTTAAACCAAACAGACGGTAACTTCAATTTTTTTTCACTTTTATTCAATTCAAAATATA AACGAATCAATCAGGGAATTGAAGTTATTGGGGTTTTGCTATGATTTTGATTGCACCCTTTTAATATTTAGATTGGTGGAGATTCAAGACATTTTTTTTT GTGTTTTTCTGTGTTTTGGGGTTTCTCCATCTAATTATATATTTTTCTCTGATTGAGTGACTTGAGAAGTTTGATTTTTATGATGTATGATGTTTTTAGG TTTTTGCAATATAGATTATTGGCGCAATTTGCTACACAGCTTAATTAAGTGATTTTTGAAGTAACCTCAAAAGTGTTTATTTTTAAAACCTTATTGAAAT AAAGCTGAAATAGCGTATAGGAATGTCATAAATTGTTTTCCTACTTATGTAGTTATGTGCTCATAAACCCAAAAAAAAGTTCCTCCTAATACATTTATAT CTGCGTCCTTTATCGAGTGACTTAAAAGTTCAAATTTTGGTCAGGCATAATGGTTTATTGATTGCCGGCATTGGAGGATTTGTCTTTTTGTTTGGGGTGG AGTTAATTTTTATTGCTTTGCTCTCATTTTGTAGAAACATTGATGTATAGGATGATTGTTTTGTTTATTTGAGAGCTCTTCAATTGTGTGTTTTAGTTCT AAACTGATTTGTCTGAGATCGATTGGTATAGAGTTAAGGTATATAAGTTAGAGGGTTCGTGGAAGCTATCACAGGAGCTAACTCGGTGGCTGATGAGTTT GCTAAATATGGTCTGGACCTGGATCGTAGGTTCCGCATTTTTTATGTTCCTCCTTCTTTTTGTACTGTTAAACTCTTGCTTGATTCAGCCTCCACTGTTT ATAGTAGGGGTATGTAATCGTGGTTTTCTGTTTTGGGGCTGTTAGCTCCCTTTGTTTCATCAAAAGAAGGATTGGAAATCCTTCATGGTTGATTGAAATC AGGAGTAGTAGAAACCGTAATATCTAGTAATGGATACCTTGGAATACTTTGTCGTTATATGTTAGCAAGTTAAGGCTTAGTTTATTTTAAGTCTTCTCAA CTGTTTTATAAGGGGTCTTATTAATATTTTGGAACTGCAGAACATGTTAGAGGATTTTCAAGTGCAGATTGGGGTTTCCCGGGAAGGAACCCAAATGAGA ATGTGAATGTGCGTCCTGATTTTTTGAGGGATCGGGTGGATTTATACCCCAGTAGTGAGAATTTTGTGCAGGACCGAGAGAATATAAACTCCAGGAGTGA GAATGGTGCTGGGACTGGAAGGACTTCCAGGCCAATGGACTTTGTAAGAGGAATCATAGAAGATGATGGAAAGGGTTTCATGGGGGGTTCTCACTACTCT CGATTTCATGAAGAGCAGGATGCTGATTTTGTTCATATAAAGATGCAGCGTAACAACACCTTTGTTACTGTAACAGATAATAAAGGAAATGTAAAGCTTA GTGGCTCTGCTGGTTCCTTGAAAGAAATGAAAACAGGACAAAAGCTTTCTAGGTACGCTGCTGAAGCAACGGCAGAAGTTGTTGGACGAAGGTCTAGGGG TCTGGGGTTGAAATCTGTTGTCATGAAAGTGAACGGGTTTACTCATTTTAGGAGAAAAAGGCAAGCGATATTGAGCTGGAGAGAAGGGTTTGCTGATTCT CGAGGGGATAGGAATCCGATTGTTTACATTGAAGATACCACTCGAAAGCCCCATAATGGTTGTAGGCTCCCAAAGAAACGACGTATTTAGTTGTTGTTAC TCTGACGTTGATCAACACATAAACTCAGGTGCAGTATGGGCACTTGCTGATATTTTTCTTGAACATTATTTCATTGTAATTCCTAATTTTGTAGACTGTG TTTGCAATCCTTTGTTTTCATTTTATACAATTATGAAGGTTCTATAAATAGAATTTTCTGTAGCAGTATGTATTGCAGGGCATGAAGCTGCTACTGGTTG ATATTGTCTTGCAAGTTGCAACCTTCACCTAATTTTACATGTTTGATTGCATAACAGTGTTTCACATAAATTTCTAAGAGGCTTTTTAACTTGAATCGTT ATATCAAGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_127342; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_358560
| Blastp | Probable ribosomal protein S11, mitochondrial from Arabidopsis with 61.84% of identity |
|---|---|
| Blastx | Probable ribosomal protein S11, mitochondrial from Arabidopsis with 56.4% of identity |
| Eggnog | Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (By similarity)(COG0100) |
| Kegg | Link to kegg annotations (AT1G31817) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449420.1) |
| Pfam | Ribosomal protein S11 (PF00411.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |