| Id Trinity | TRINITY_DN35688_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_358606 |
| Sequence | GAAATAACCAACAACAGAATAAGAAAATGTCTCCTTTATCCTTTTCCAATCTTCAAACATTGCCGCCAATATCTTCCAACCACCGTCCGAAACCACCGCC ACTCGCTTCCCCCGCCGGCTCACGGCGGCGAATGCTATATATATGTTGCGCTGAAGGAGGTGGCAGAGTAAAGAGGACAAGCACTGATGACTATCATGGA ACACTAAAAGCTCTCAATTCCAAAGGCAGATTCCCCAGAAAATCTCTTGGCCAGCATTATATGTTGAACTCTGACATAAATGAGCAGCTGGCTGGTGTGG CTTGTATTGAACCAGGTGATGTGGTGTTGGAAATTGGGCCCGGAACAGGTTCCTTGACTAATGTCCTTTTAAACTCTGGCGCATTTGTTCTTGCAGTTGA GAAGGACAAACACATGGCTGCACTTGTGAGTGAAAGATTTTCAAGTACAGGAAAATTTAAGATTTTGACTGAGGATTTTGTCAAATGTCATGTGCGCTCT CATATGTCATCATTGGTTGAAAGCTTAAAGCAAATGGATCAAGAAACTAGAAATGCAAAAGTAGTTGCCAACATTCCCTTCAATATCAGCACAGATGTGA TCAAACTACTACTTCCAATGGGTGACATTTTCTCAGAGGTCGTTCTACTTCTCCAGGAGGAGACTGCCTTGCGCTTGGTTGTATCATCACTCCGGACCTC TGAGTATCGTCCCATCAATATATTTGTTAACTTCTATTCAGATCCTGAGTACAAATTTAAGGTCCCAAGAACACATTTTTTCCCTCAGCCTAATGTCGAC GCAGCTGTTGTCTCATTCAAGTTGAAGCCACCAACACGATATCCCCAAGTTTCTTCCAGTAAAAGCTTTTTCTCGATGGTTAATTCTGCATTCAATGAGA AGCGTAAGATGTTGCGCAAGTCACTTCAACACATATGCACTTCCCTCGAGATTGAAGAGGCTTTAACAAGCATAGGTCTTCTAGCTACATCAAGGCCTGA AGAATTGACAATGGATGATTTCACAAAGTTGCATAACTTAATTGTCAAATAGGAACACTCAAGATTACTAAGGATTCGAAGAAAAGCCTTCGGCGAAAAC AAACCGAGGGAATATGCCTTCTTCAACAACCCTCATGCCAAATATCTATCAAAGAAAGAGTTTTAGGGACAAATGGGATATACTGGGTAGGAATATAATA GCTTTCTTTGTACACTGATATTTCATTTCAAGGATAAGACATTAATAGCTAATGAAATGTATAATTTGATAAGCAATTGAAGGAAGTGTAGGTAGATTAA ATCATAACAAATTGCAATTTCAGGTATAATCACTTTAGTTGCAGACTTCATATGTTTAAGCTTGGAAAATTTTGTCAATTGAAATGCTCGGATATAAACA TAATGACAAAAACTCCAAACAAATTTGTATATGAACATGTTTCAACTATTTTGTTTTTGTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_127421; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_358606
| Blastp | Ribosomal RNA small subunit methyltransferase, chloroplastic from Arabidopsis with 69.11% of identity |
|---|---|
| Blastx | Ribosomal RNA small subunit methyltransferase, chloroplastic from Arabidopsis with 69.11% of identity |
| Eggnog | Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (By similarity)(COG0030) |
| Kegg | Link to kegg annotations (AT1G01860) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464969.1) |
| Pfam | Ribosomal RNA adenine dimethylase (PF00398.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |