Ll_transcript_358607

• Id Trinity: TRINITY_DN35688_c0_g1_i2
• Name Transcript: Ll_transcript_358607
• Sequence: GAAATAACCAACAACAGAATAAGAAAATGTCTCCTTTATCCTTTTCCAATCTTCAAACATTGCCGCCAATATCTTCCAACCACCGTCCGAAACCACCGCC ACTCGCTTCCCCCGCCGGCTCACGGCGGCGAATGCTATATATATGTTGCGCTGAAGGAGGTGGCAGAGTAAAGAGGACAAGCACTGATGACTATCATGGA ACACTAAAAGCTCTCAATTCCAAAGGCAGATTCCCCAGAAAATCTCTTGGCCAGCATTATATGTTGAACTCTGACATAAATGAGCAGCTGGCTGGTGTGG CTTGTATTGAACCAGGTGATGTGGTGTTGGAAATTGGGCCCGGAACAGGTTCCTTGACTAATGTCCTTTTAAACTCTGGCGCATTTGTTCTTGCAGTTGA GAAGGACAAACACATGGCTGCACTTGTGAGTGAAAGATTTTCAAGTACAGGAAAATTTAAGATTTTGACTGAGGATTTTGTCAAATGTCATGTGCGCTCT CATATGTCATCATTGGTTGAAAGCTTAAAGCAAATGGATCAAGAAACTAGAAATGCAAAAGTAGTTGCCAACATTCCCTTCAATATCAGCACAGATGTGA TCAAACTACTACTTCCAATGGGTGACATTTTCTCAGAGGTCGTTCTACTTCTCCAGGAGGAGACTGCCTTGCGCTTGGTTGTATCATCACTCCGGACCTC TGAGTATCGTCCCATCAATATATTTGTTAACTTCTATTCAGATCCTGAGTACAAATTTAAGGTCCCAAGAACACATTTTTTCCCTCAGCCTAATGTCGAC GCAGCTGTTGTCTCATTCAAGTTGAAGCCACCAACACGATATCCCCAAGTTTCTTCCAGTAAAAGCTTTTTCTCGATGGTAGCCCTTTCTCCAACATGTA CTATCATATCATTCTTTGAATTTCTAGGGATTTTTCTTTAATTTCATCAAAAGTTTCATTGCATTGAAATATCTGATAACACAT
• Tissue: pods
• Gene name: LI_gene_127421;
• Additional information: details;

Expression of Ll_transcript_358607

FPKM

• PAB: 0.3
• PNAB: 0.6
• PS1: 0
• PS2: 0.5
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_358607

• Blastp: Ribosomal RNA small subunit methyltransferase, chloroplastic from Arabidopsis with 68.22% of identity
• Blastx: Ribosomal RNA small subunit methyltransferase, chloroplastic from Arabidopsis with 68.22% of identity
• Eggnog: Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (By similarity)(COG0030)
• Kegg: Link to kegg annotations (AT1G01860)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464969.1)
• Pfam: Ribosomal RNA adenine dimethylase (PF00398.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;