Ll_transcript_408010

• Id Trinity: TRINITY_DN35801_c0_g1_i1
• Name Transcript: Ll_transcript_408010
• Sequence: AGAATATATAGAGTTGGAAATGAACTAAAACTAAAACCCTATCTAAACCCTCGTCTCTTTCTTCTCTAGCAACAACAACAATGTCAATGTCGTTGTTTCT GAGACTCAGAAGAAACCAAAGTCTTATTCGAACCCTTCCTCACTTCCGTACAATCTTCTCTTCTTCAACAACGAAGGTTCTAGAAACTTTCAACGAAGAA TTTGAAATCGGTTCACGCTTGTTCACTCTCGAAACTGGTAAGATCGCGCGTTTCGCTAACGGCGCTGTCGTTTTAGGAATCGATCAAACCAAAGTTCTTT CCACTGTTTGTTCTTCCAAAGGAGATGCTCTTCGTGATTTTTTACCACTCACTGTTGATTATCAAGAGAAGCAATTTGCACAAGGTCTCATTCCAGCTAC ATATATGCGGAGGGAAGGTGCTCCGAAGGAACGTGAACTGTTATGCGGTCGAATCATTGATCGTCCGATTCGTCCGTTGTTTCCGCCTGGATTTTATCAT GAAGTTCAGGTATTGGCAAGTGTTCTTTCTTCGGATGGGAAACAAGATCCAGATGTACTCGCGGCTAATGCAACATCAGCTGCCCTTATGTTATCAGACA TTCCCTGGGGTGGCCCCATAGGAATGATTCGAATTGGGAGGATACACGGACAATTTATTGTAAATCCTACCATGGATGAGCTAAGTTTAAGTGATCTTAA CTTGATATATGCTTGTACACGGGACAAGACTTTGATGATTGATGTACAAGCTCGTGAGATAACTGAGAAAGACCTTGAGTCTGCTTTAAGACTGGCTCAT CCAGAGGCAATCAAGTTTATTGAACCTCAAATAAGGCTTGCTGCTAAAGCTGGTAAGTCTAAGAAAGAATACAAATTGTCTATGTTGTCTGACAAAACAG TGGAGAAAGTTGCTAAACTGGCAGAAGCATCCATTGAAGAAGTTTTTACTGATCCTGCTTATGGAAAGTTTGAGCGTGGAGAAGCATTAGAAAATATTAC ACAAGATGTAAGGAAAGTTTTTGAAGAAGAAGGTGATGAAGAAAGCTTAAAAGTTTTGCCAAAGGCTGTGGACACAGTGAGGAAGAAGGTGGTCCGTAAA AGGATTATTGCAGAAGGATTCAGACTTGATGGAAGACATCTGGATGAAGTTAGGCCTTTGTATTGTGAAGCTGGAATTTTACCCATGTTGCATGGTTCTG CACTTTTTAACCGTGGAGATACACAGGTCCTTTGCACAGTAACACTTGGAGCACCAACAGATGCTCAACACTTGGATTCTTTAGTTGGCCCTCCAACAAA GCGATTCATGCTTCACTATAGTTTTCCACCTTTCTGCATCAATGAAGTTGGAAAACGTGGTGGTCTGAACAGACGTGAAGTTGGACATGGAACTCTTGCT GAGAAGGCACTTCTTGCTGTGTTGCCTCCTGAAGATGATTTCCCATATACTGTTCGTGTCAACTCAGAAGTCATGGCTTCAGATGGTTCAACATCAATGG CAACAGTATGTGGAGGTAGTATGGCTTTGATGGATGCTGGCATTCCAGTTCGTGAACATGTTGCCGGTGTTTCTGTGGGTCTTGTTACTGAACTTGATCC GGCCACTGGCAAAATAACAGACTATCGTATATTGATTGATATTTTGGGCTTGGAAGACCATTTGGGTGACATAGACTTCAAGATTGCTGGAACTCGAAAA GGAGTTACTGCTATTCAGTTGGATATGAAGCCCGCTGGAATTCCTATAGATATTGTATGTGAATGCCTAGAACCTGCTCGTAAAGCTCGTCTTCATATTC TGGATCACATGGAACAAGAAGTTACCATACCTCGCATCAAGAATGACAGTACTTCTCCACGACTAGTCACCTTAAAGTACAGCAATGATGCTCTTCGTCG CTTGGTTGGGCCAATGGGTGTTCTAAAGAGAAAATTGGAAGAGGAAACAGGTGCCCGGCTGTCTGTAGGTGATGGAACTCTTACAATAGTTGCAAAGAAC GCATCTGTAATGGACAGAATATTAGAGAAGATTGATTTTATAGTTGGCCGAGAAATCGAAGTTGGAGGGACATACAAAGGTGTTGTCACCTCTGTAAAAG AATATGGAGTTTTTGTGGAGCTTAATGGTGGCCAGCAGGGCCTTCTCCACATCTCTGAGTTGTCACATGAACCGGTTTCCCAAATTTCGGATCTTGTCTC TGTTGGCCAGCAGCTTGATGTAATGTGCATAGGCCAAGATATTCGTGGTAACATTAAATTATCTCATAAAGCAACTTTGCGTTCTCCTGGCAGTTTCAAG ACTAATGATGTACCTAAAGGATCTGTTGCATCTGCAAAAGAAAAGGCCAAAATTTGGGCACCTGTATGGAATGTGCCTAGCACTGAAGAAAAATCAAGTT CTGCTTCTGAGCTGCCTATAGGAGGTCAAGATGAAGCAAGTGAAGCGAAATCAAAATCTGCTGCCTCCCAAATTCCGGTTATTTTAATACGAAGTGTTGC AGAGTGTGATGAGGAGGAGAAGTCTAACAGCGTAGATCTGTCTTCAAAGGGTACTACAGTTAATAATGGGGTAAAGTCGAACAGCAAGTCAAAATCTCGT CGATCTAAAAATACAGCTGATTCTCCATCTTCTGATTCAGGTCCTTTACCATATAAAAATGTTAAGATTTCCAAACCTTCAATACAAAAAGCTGTTGATA AGGCAACAGTAACTGCCAAAGATCTGACACTTGGAACCAAAGTTACTGCCAAAGTTTATCAAGTTTGTGCACATGGGTTGGTATTGGAATTGGGTGGAGG ACTTCGAGGCATGTACCGGTTCAAGGAAAACAACAAGAGTGATTTTAACATAGGTGACGAATTGCGAGTTGTGTGCTCAAGCTTTAATAGCAAGGGAGTT CCAGTTTTGTCTTTGGTCGATGAAGAATAACTTCGTCGTGTTCATTCCTTTCATGAGAGAGACCGTAGATTTACACTGCCATGAGTTCGAGAAATACTTG CAGCTGTGTAAGCACAGGACCAATGATTTCATTGAAAATGTGGTTATTGGCAGAGCCTAATGAGACATCAATCGGTTTATAACTTACTTCATTTAGTGGG AAAATGGTTAAATCACCATTGAGCTGCAGAATGAGTCCCATGCAATTCTTGAACTTTTGTGGTCCTTCCCTTAAGATATGAAAGGTTGAGAATGCTGGAA AATGGCTCTAAGTGATGCTTGATCACCATTTCTTAACAAGTCATGACCGGTGTAAGTCTATGTTGTCCGTTATTGTTCAGTTTTTTTGGTTGAGGAAAGG AGGAATTAAATGTATACATCATTAGCTCATCTTAGGTTTTGTCACCTACAACATTTCATTATCACAGATTGTTTTCTTATTTTATTTTTTTCACTATCCA AGCTTCAGTACAATTGGTAAGGAATTGACTCATAATCCACAAGGCTATGAATTCAAATCTTGATGTTGCTGTGAGGATCTCATTGATGAGTAATCTGTAA GCACCTTTACAAGTGTTCATGGAGTCGCTTTGGGTTTCGGGTATCATCGAAAATGTAACAACCCTGATCTGAAGCATACCCTGATTTCTTTGCCTTTTAG TGTTTCACATCTGTTATAGGATAATTCTATAATTTGACTTTTAGTGTGTAAGTACTTTTGGGGTTTAGTATCACCTATACTATACCAAATATGAACCCTG AACTTAGTCAAAGCAAGTTTTACTTGTTAATGGTGTTTTGTTCTTGTTGAACAATAAGTTAGAATAATATTATGTTACTCTTTACTCCACCTCATTTTCA AGGCATCTACAACACTTCTTACTATAACCAAGTTATAAAAGACTTCTG
• Tissue: pods
• Gene name: LI_gene_127513;
• Additional information: details;

Expression of Ll_transcript_408010

FPKM

• PAB: 0
• PNAB: 3.3
• PS1: 2.2
• PS2: 1.5
• PS3: 2.5
• PW1: 1.5
• PW2: 1.1
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_408010

• Blastp: Polyribonucleotide nucleotidyltransferase 2, mitochondrial from Arabidopsis with 65.79% of identity
• Blastx: Polyribonucleotide nucleotidyltransferase 2, mitochondrial from Arabidopsis with 65.52% of identity
• Eggnog: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction (By similarity)(COG1185)
• Kegg: Link to kegg annotations (AT5G14580)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442533.1)
• Pfam: 3' exoribonuclease family, domain 1 (PF01138.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;