Ll_transcript_408062

• Id Trinity: TRINITY_DN35897_c0_g2_i1
• Name Transcript: Ll_transcript_408062
• Sequence: AGAAGATTGAAATGAGGCAGCAATCAGATACACACACAGAAAGAGAGACACAGTGTTGTTGCTGCTTTCCCTCTAATCAGGTTTCTTCTTCTTCTTCTTC CCATCAACTGTTTCATCATTCATCGTTATCTCTTTTCTTCTTATTTTAATAACTTCTTAATATCAATACTTGCAGTATTGTTTCATGATTACTCAATCTA TTGAATGCAAAAATAAATGTCTCAACTGGATCTGCTACTATCCTTAAGCAATTTTGCATCATATATTTTGTTAATTGATACATTGAAATGATTGGGTTGT TGTTTGACATATAAGAATGTGATAGTTGATAATTTGTATTGTAAAACAGGTATGGTGATCCCACCTCCAGTTAGGGCTGTGAGGATTATAAATTATCTGA AACCCTATGTTCTGAAGATGCATTTTACCAATAAGTATGTGACTGCCCAAGTCATCCACACACCAACTGCTACTGTAGCCTCTTCTGCAAGCTCACAAGA GAAGGCGTTGAGATCGAGCTTGGAAATAAAGCGCGATGTGGCTGCAGCCGCAAAGATTGGTAAGATTCTTGCCGAACGCCTTTTGCTCAAGGACATACCT GCTGTTTCTGTTCACCTCAAGAGGGAACAGAAATATCATGGCAAGGTTAAAGCTGTTATTGATTCTATGAGGGAAGCTGGTGTTAAGTTGATCTGAGTTC TGCTTCTTCGCTTTTCTATTGTTTCATTCCAAAATAAGAACAACCAATTAAGTCCATGTATTCACTTGTATTTTCGAAGTTGAAACACTCTGGACATGTC TCATCAAGATATATTTTAAATCTTCAAATACAAGATGAATGTTGATGATCACAGTTTCCTAATCTTTTGCCTCCTAGTCTAAATATCATGAGGTTGTGTT TGAAAGCTATTTTTTCATAAGCTATTTGAAGTAACCTTTAGAAGATGAAAATGAGCTTCTCTTCAAAAATTTAAACTTTTTTCAACATCAAGATCCGAAA TTTCTGTGGAAG
• Tissue: pods
• Gene name: LI_gene_127588;
• Additional information: details;

Expression of Ll_transcript_408062

FPKM

• PAB: 0.5
• PNAB: 1.2
• PS1: 0.6
• PS2: 0.6
• PS3: 0.5
• PW1: 0.6
• PW2: 0.8
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_408062

• Blastp: 50S ribosomal protein L18 from Xanthobacter with 39.62% of identity
• Blastx: 50S ribosomal protein L18 from Azorhizobium with 41.51% of identity
• Eggnog: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (By similarity)(COG0256)
• Kegg: Link to kegg annotations (Xaut_4782)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435751.1)
• Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (PF00861.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;