Ll_transcript_329190

• Id Trinity: TRINITY_DN36275_c0_g1_i2
• Name Transcript: Ll_transcript_329190
• Sequence: AAGGTCCACCATTTATTTTTAATTTTATTAGCTTTTTAAAAGTAATATAAATAATCAATTTTATGTTGACCATAGGCGTAAAAAAATAAAAAAAATTGTC CACAGGTAAATATACATGGCTATTGGTGTGAGATGTTGAATTGTAAAAATGACAAGTTTTGTCTGTGGTCGAAAATAGCCTCTAATCGGAAGGTATTATA AAACGAGAGATGTTTTTAGGGTTGTGCGGTATGAAGGAATCAATGGGAACGGAAATGTTGTTGGAGGACATTGAAGATTTGATGGTTGGCGGCGCCACCG GTTTCCGGTTGCCAATAGCGTCTAACACTGTTGCCGTTGCTCCTTCAACTAAAAAGAGGAATCTACCACACGACTCTTCAATTCCTGGCACTCAGACTAT TTACATCAAGACCTTTGGATGCTCGCATAACCAGAGCGATAGTGAGTACATGGCTGGTCTCCTTTCAGCCTTTGGCTATTCCTTATCTGATAATCCTGAC CAATCAGATCTCTGGCTCGTCAACACTTGCACTGTCAAATCCCCTAGTCAGTCTGCAATGGATACCATTATCTCCAGAGCCAAATCTTCTAATAAACCAC TCGTTGTTGCCGGCTGTGTCCCTCAAGGAAGTCGTAATGTCAAAGAGCTTCAAGGTATCAGCATTGTTGGCGTTCAGCAAATTGACCGCGTTGTTGAAGT CGTTGAGGAGACTTTAAAAGGGCATGAGGTTCGCCTCTTGACTCGTACCACCCTCCCAGCACTTGACCTTCCTAAGGTCAGGAAGAACAAGTTTGTTGAG ATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACTAAGCATGCTCGTGGTCACTTGGGCAGTTACACTGTACAAAGCCTTGTAG AGCGCATAAGATCTGTCATATCTGATGGAGTTAAAGAGATATGGCTCAGCAGTGAAGACACTGGAGCATATGGTCGTGACCTTGGTGTCAATCTTCCAAC TTTATTGAATGCCTTAGTAGCTGAACTACCAGCTGATGCTAGCACAATGCTCCGTATTGGAATGACTAATCCACCCTTCATCCTTGAGCACCTGAAAGAA ATAGCACAGATTTTGCGGCATCCATGTGTGTACTCATTTTTGCATGTACCGGTTCAGTCTGGAAGTGATACTATTTTGAGCGCTATGAATCGAGAATATA CTGTGAGTGAGTTCAAGACTGTTGTAGATACCTTAACTGAGCTTGTGCCAGGGATGCAGATTGCCACTGACATAATCTGTGGATTTCCTGGCGAAACGGA TGAAGATTTTGAACAAACTGTCAACCTTGTTAATGAGTACCAGTTCCCACAAGTTCACATTTCACAATTTTATCCACGACCAGGGACACCAGCTGCAAGG ATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGACGAAGCCGTGAATTGACAAATGTCTTTGAAGCCTTCACGCCATATAATGGGATGGAAGGCAGAGTGG AAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCATTTGGTTGGTCATACGAAGGGATATATACAAGTTCTTATAATTGCTTCAGACAATATGTT GGGAACGTCAGCTATGGTTAAGATAACATCTGTAGGAAGGTGGTCAGTTTTTGGAGAAGTAATTGAGATGGTCAGCTATAGTGACCGTAAAGTTTCATGC AAGCAGATTCCTAATCAGGACGTGCCTTCTCTCTGCTGTAATCCAGCCAAGAATGGTGGACTCTCAGAAACGACAGAATGTTCTGCTTGTGGAAATGACA GCTGCTGTGGTCAGAGTATGCTGGAGAAGAGCGATGATTCAAGAAGCTCTGTTGTGCCACAGAATCAAAATAGTAGAAGCTTTGTTGGATGGATACTAAG GAAGCGGAAGCATCTGCTGCATAGAGGGACAGAGAATGGCATTGACTCAGCCTCAGGATCTGTTTCGAAGCACGAAGGGGACCACGGGAGCATGACAAAA TGGGACTTCATTGATAAAGCTCTTCTGGGTGGAATATCTGTCAGCATCTTCACTATTATTGCTTTAGTAGTAGCTCTTAAGTTTAGTGTTTTTTGGTCCA AGTAAAAGGATGTTAGTGTATAATTTTTGTTGAACCAAATTGTTATTCCATATTTTTGACTTACAGATTGGTGCACTTGTATTCAGTGGTTGTATTATAT GATTGCAACATTTGACTGGCATAGTTAGCAACAATAGGAAGTAAAACATTTCATAATAATTAAAATAATAAAGCTATTACAACCCCAA
• Tissue: pods
• Gene name: LI_gene_127913;
• Additional information: details;

Expression of Ll_transcript_329190

FPKM

• PAB: 5.5
• PNAB: 23.7
• PS1: 20.1
• PS2: 17.2
• PS3: 18.2
• PW1: 19.1
• PW2: 18.7
• PW3: 18.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_329190

• Blastp: Threonylcarbamoyladenosine tRNA methylthiotransferase from Silurana with 53.07% of identity
• Blastx: Threonylcarbamoyladenosine tRNA methylthiotransferase from Silurana with 53.07% of identity
• Eggnog: Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (By similarity)(COG0621)
• Kegg: Link to kegg annotations (394802)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454410.1)
• Pfam: Uncharacterized protein family UPF0004 (PF00919.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;