Ll_transcript_534072

• Id Trinity: TRINITY_DN36479_c0_g1_i1
• Name Transcript: Ll_transcript_534072
• Sequence: AAAGAAGTCATCACTAGAAAAACAAACCAAGAGTAAGGGAAACTAGTCCCCGAAGTAAAGCCCTACAAATTCAATTCATAGAAGCCCTTAAAAAAAGAAA AACAGAAAGCACCACCAAGTTGCAACGGTTTCATACACTAGTGCACGTTAGAAGCGCCGCAACAGCATAAGTTACAAAATAACCAAACATTCTCTTCAGC AACAACAACAAAAGTAGTAGCAATGGCGAAAGGTGACGATACATTGCAGAAGAAGAAGAACAAAGCCATTAGAAAGAGGAACAATCGCTCTTCCTCCGCT CTCTCTGTCAAGGTTTCCGCCGCTATTGCCGCCAAGAAACGCCGCAAGGCCGGAAAACGCCGCCTCTGTCAGGGGATGTGCTATAGCCTGCCTACTCCAG AAGATCCATTTAATGATCGTCATGGGAAAGAGGACTTCAAAACAAAGGGTCCTAAAAATAAGACACTTCCCAAGAAAGATGAAACGGTTCCTCTTATTGA GAAGGATGCATCAAGAAGGAAAGGCTCACATGATGTGAAAATTTCAAAGAAATCATATCATTTAGAGAAGGAAAATGAGTCTGACAAAGCCACCGATAAT CTTGGTAAAGAATCTATTATTACCTCAGAAAGTGAAAATACTGAAGAGACTGAGACGGAGGACGATCTTTGTGGTGCCCAACAGAACCATCGTGAAATTT CTGAGTTCCCTTCAAAGTTTGTTTTTTGGTGTCTAAGTTCAATTGAAAATGCATTACGAGAAGGTGATGCATACACTGATGGAGAGGGTAACTCATTGTT TGCTAATTCATGGGGCTTAGAATTTTCCAAGTGTTATGCCACTGGGAAGGATGTGATGGAGACCAGTGGAAACTCTGCTACCAATGAGCAAATTGCATGG GTGGTTTCTGGTGCAGCTGATACTTTTGTTGGTAAAGAGCTACAAGGCGTATCATTTTCCAGTCCCTTTCTTATATTCCTTGTGCCATCCCAAGAAAAAG CTACCCAGGTCCGGAAAGTTTGTAAGCCGTTGAAATCTATTGGAATACATACAGTTAGCATACATCCAGGTGCCTCATTAGATCATCAGATTCACGGTCT GAAAAGTTGTGAGCCTGAGTTTCTTGTTTCTACTCCTGAGAGGCTTTTGGAGCTTGTGTCTTTGAAGGCCATTGATATATCTGCTGTTTCCATGCTGGTT GTCGATGGGCTTAACGCTATTTGTAGTGCTGGCCACAGTGATACACTAAAATCTATCAAGAAGTTCATTTCTGGCAATCCTCGTCTTTTGGTTTTCAATG ATTGCTTCAGCCATACATATATTGCAATGGTTCAGAATCTTCTTACAGGACCAATTTGTAGACTGTCTCTCAATAATTCAATTACCAGCCTAAGTTCATG CATTATCCAATCTGTTGAAGTGTGTACCTCAGAAGATAAACTTGTCAAGGGCATCCAAGCCAAACATCCATTTTGGAGCAGTGGTATTCATAATTCAAAG CTGCTATATATTTTAAGAAATGAAGTCAAGTGTGATAAGTTGGTCAAGTATCTCAAATCTAAAGGTTGTTCTATCTCACTGGACTCTGAGAGTGTGGATT CAAACAGCAGAGTTTCTGTGGTTTACTTGGAGCATATCTCAACTACTGATATAGGAGTGTATGATGTGGTCGTTCTACCGAGTTTTGTACCTTCAATGGA CAGTTATGTCCATATTTTGACAAAGATGGCCCGCGGAAGTGTCAATGGGGTATTACACAGTTCCTTAACAAAAAGAGATACAGAACTTGCTGAACCACTG GTCGAAATTCTTGAACAATGCGGGCAGAAAGTGCCTCCTACCTTGAAAGATTTGCAGAACACATCAAAATGAGGGAAGATTGAATGTTTAAGGGTTTGAT GATTATAATCATATTACGATTGGAAACCTTATTGGATATGAAATGCTACAGCAAATGAAGAACCTCAATCATCAGAAAATTTTTGCCATATTATTTATGT TGCTTCTATTTCAAAAACTATTTCCTGTTTAAGTTGAGTGAAGGACAATGACATTTATACATCAGCAATTTGAGCTGCACAGATTAGACACATGGGGGCA CGATAATAATTTGGCACATGTATTCAATGAGGGAGCACATCTTCTGTTTACAATATGTCCCTCCATGTGTCATAAGCTGTGATTGGTTGAAGAAAGTGTC TGTGCCTGTGATGTTAGCAAGCAGAGTTGTTTAGATTAATATTTTCTTTCGAAATTTGTTTCTCTTTATCCAAACAAGAGAATGTTTTAATTTTGAATTT TTCCTGTTTGGTCCCTTTACCCTCTATAATATGCAAGTGCTGATAGCTACTTCTAGGAGTATGCTTTTGGCTTCCAAATATATTCAGGTCGTACTAAAAA AAATACAGTGTGATAAGTTAGCATTCAC
• Tissue: pods
• Gene name: LI_gene_128094;
• Additional information: details;

Expression of Ll_transcript_534072

FPKM

• PAB: 0.7
• PNAB: 10.4
• PS1: 6.7
• PS2: 6
• PS3: 7.8
• PW1: 4.1
• PW2: 3.6
• PW3: 1.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_534072

• Blastp: Pre-mRNA-processing ATP-dependent RNA helicase prp5 from Sclerotinia with 24.76% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 14 from Oryza sativa with 24.15% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (SS1G_06839)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449808.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;