Ll_transcript_452832

• Id Trinity: TRINITY_DN36561_c0_g1_i1
• Name Transcript: Ll_transcript_452832
• Sequence: AATTTAAGAACATTTATGTATTTATACACGTTGACTTGTTAAACAGTTTGGATAGTTAAAACTTAAAAGTTTAGTTTATGAGTTATACTAATATGAAGAA ATATTAATTAGCAAAGAAAGGAAGGTGAATTCAGCAAAGACAAAGATGGCATCGGTGTTACCATACAGTGATGTTGATTCCACGTTGAGGGCAATGGCCG GTCGCGCCGAGGGTTTCGGCTACCTCGCCATCGGTGGCCTCCACGGTCCTGTCTATTCCGTCACCACCCTTTCAGATGATGGTCCTGGGTCTCTTCGCGA AGGATGTCGTAGAAAGGAGCCTCTATGGATTGTTTTTGCAGTTTCAGGCACAATTCATCTTTCATCATATCTGAGTGTGTCATCTTATAAGACCATAGAT GGCAGAGGCCAGAGGATAAAATTGACTGGAAAAGGCTTGAGGCTGAAAGAATGTGAGCACATAATTATCTGCAACCTTGAGTTTGAGGGTGGTAGGGGTC ATGATGTGGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGGCTGATAGACATTACAAG GCAAAGCACGGATATTACAGTATCTAGGTGTTACTTTGCAGAGCATGACAAGACCATGCTGATTGGAGCTGATCCATCTCATGTTGGTGATAGATGCATC CGGGTGACTATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGGTTTGGAAAAGTTCATCTATACAACAATTACACCAGAAACT GGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCACAGATATACTCTCAATGCAACATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTTTACAC GGAGAAGGTAAAATAATTTTCTCGTCACTTCATGTTTGCTGCCTGTTTTATCATCATTGATCAGGGACCTTCATGGCCTATCGCATGACCATATTCACTA TATTTTAACTCATTCCTCATTTCTGCACTCACATATAACCCAAGAAAGGGATGTTGTTAAATATCCATTATTCAACCCTTTTTGGTATGAGTTTTTGTCA CATGAATATTTTTCTTGGTTCTACTTTTGAAGCTTGGATATGTAATTAATTGGATATGCTTCTTGAATTAGACAATTTCGTAATATTGTTTTGGCATATG CTTTGTTGTTTAGTATGACCTTTTTCTCAAATTATGTCCATAAATACCTTTAATCTTAGTTGAACCTTCGGCTCACTCATCGTTGTGACCTGGATTCAAT TCTCCTACCAAAAATCCTTATTGAGGTTCATGGTCATGGCATCTTTCTCAAATCAAAACTTTTATCTACCAAATTATTATGTGAATAAATAATTAGTATT TTACTCTTTGCTCCAACCATATTGGACAACACTTTACACCCCAGATATCTACTAATTAATGGTTGCGATAAAAATGGTTCCCTAGGCTGCAGATAAGGAA GAGCACAAATCTGGCTTTATAATATCTGAAGGAGACATGTTCCTGAATGGTGCTCAACCTTGCTCGCCAATGGAATACAAGGAAGAATCCATGTTCCATC CTAGTGAATATTACCCAACATGGACATTGGAAACAGCTGCAGATTCTTTCAGGGAAATCCTCCAATTATGTACAGGTTGGCAATCCATTTCGACGCCGGT AGACCATATTGAATAAGATTCATTGTAATTGCAGGAACACATGTGGTTTATGTGTCACCATCTACAATACATTAACCAGAATTCAGAGACAATGCTTAAC TTGTCACTCTTTTAATCCTACTAGTATTATCATCTTTATTGTATTCTTCAATAAAGGAATATTTATCTGAACTTTGGACTCATCTATGAATATATGCCTT CTTTTGTTATTTCCTTTCGACAATTACATTTAGGTGGTGGCCAAGCAAGACGATTATAATATGTTTCCTATGTCAAATCTATGAATAT
• Tissue: pods
• Gene name: LI_gene_128168;
• Additional information: details;

Expression of Ll_transcript_452832

FPKM

• PAB: 0.2
• PNAB: 0.6
• PS1: 0.5
• PS2: 0.3
• PS3: 0.6
• PW1: 0.4
• PW2: 0.4
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_452832

• Blastp: Probable pectate lyase 4 from Arabidopsis with 41.98% of identity
• Blastx: Probable pectate lyase 4 from Arabidopsis with 42.62% of identity
• Eggnog: pectate lyase activity(COG3866)
• Kegg: Link to kegg annotations (AT1G30350)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019451142.1)
• Pfam: Pectate lyase (PF00544.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;