| Id Trinity | TRINITY_DN36953_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_530955 |
| Sequence | CACACATATAAATAAGTGAACCATATACTCTTTTGTCACATCACACTCATTCTCATAAATCAATCGACGTTACAATTGTACTGATATTAGAGCAATGAAT ACTTTATCATTAAGCTCAAACATAAGCATATCCAAACCTGTTCATTGTCTTCCATTCTCAAACAAACAACATAAACCTTCACATATGAAGTTTGTTGTTG TTTCATGCATAGCCACAAAGGTGAAGAGTAATGAAAAAAACTTGTACAACATACTTTCATTGAGTCCCAAAAGTGCAACAATGGATGATATAAAGAGATC ATATAGATCAATGGCTCTTCAATACCACCCAGATATATGCCATGACCCTTCCATGAAAGAAGAGTGTACTAGGATGTTTGTGAAAGTAAATGCAGCTTAT GAGACATTGTCAAACCCTATGCTTAGAGCAGAATATGATTGCGAGTTGGGTTTGAGAAGCAGAATGATGAGCAATGTTGGTGTTAGTGAAGATGAGAAAT GGAGAAGAAGGTGGCAGGAACAAGTTGGTGGGTTGAAAAAAAGGTCCCTTAGACGTATGGGACAAAAGGGCGGGTCATGGGGCAATAGAATGAGGACACA AAATATGAAAGATTAGAATTGATTTTCTTACTCATATTTGAACAATTCAGTTGTTACAGTGAGAAATGAGTATTAAAGCACATTTTTTTATCATTTTCAA AATTGAAGAGGTATATCTTTTGATGGAGTCCTTTCAAGTAATTCACTTAGAGTCATGAATGTAGTTATTCATTATGAATGATGAAAGGATATGCTAGTTC CCGGAGATTAAGGATGTCTTCAAATTAAATGTTGCCTGAATATTAATTCTATTATAGTTTGAGTGTATAATGTAGTAATAGTGTAAAAAACTCTTACACT ATAGTGTACACATATTTTTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_128505; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_530955
| Blastp | Chaperone protein dnaJ 20, chloroplastic from Arabidopsis with 35.46% of identity |
|---|---|
| Blastx | Chaperone protein dnaJ 20, chloroplastic from Arabidopsis with 34.78% of identity |
| Eggnog | ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484) |
| Kegg | Link to kegg annotations (AT4G13830) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460372.1) |
| Pfam | DnaJ domain (PF00226.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |