| Id Trinity | TRINITY_DN38241_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_325230 |
| Sequence | TTTCATTCGATGTTCAAGGGTTCTTCTTATCTCCTTCCCAATCTTCCAAGAACAACCATGATTATATGCAACTCCATTACTTTCAATTACAACCCATGTT TCTCTTTCACTAATTTCTACCCTTCATCACTCCCACTTTCTCTTCAAATTAAGCCCTCAAAATCACTCTCACTAATTGTGAGTGCTCGTAAGAAAAACAA CACAGATGATAGCCATAGCTCTGTACCCAAACCTGATGAATCCACTGGCTTCTTCCCTGAAGCTGTTCTTCTTAAAAAGAGGACAGTTGAGGAAGATGGT AAGGCTCTTCCGGAGTTTGAAGACGATGAAGAAAGACAACTCTTTGAATCACTGATGCTTGATGTCGAAACTGACATGAATGTGGAACTAAGTATGTAGA TTTTTCTCTCCTCTCTACTGGCTACAAGAATCAGTAGTCCTTTTTTCTGCGGATAGTTAAAACGGATAAGAAAAGATATTTTTGTTATTGTGACGCCTCG AACCCTTATAAATGAAGCCATGATGCTATCTCTAATAAAAAAAGATATCTATTTCCCAATTGTTGTCTAAATCTCATGGAGCAAGTTAAGTGCTCTTTCT CACAATATTCTGCTTCTTCACCTGTGCAGTGCGCCACTATGAGGTTATGTACTTAATTCATGAGAAGCATGTAGAAGAGGTTGCTGCTGTCAATGAGAAA ATCCAAGACTTTTTGAGAGAGAAGAAAGGCAGGGTGTGGAGACTGAATGATTGGGGTATAAGAAAGCTGGCTTACAAAATACAGAAAGCCAAAAGCGCCC ACTATATGCTGATGAACTTTGAGTTGGAGGCGAAATCGATCAACGACTTCAAGACTCTATTGGACAAAGATGAAAGAGTTATTAGACATCTTGTGATAAA GAGGGACGAGGCAATCACTGAAGACTGCCTTCCTCCTCCATTGTTTTCTGGAAGTGCCGATGACTCTGATGACGAAGATTACGAAGACTGGGATGATGAA GACGAGATGGATGACTATGATGACGAGGAGGAGGACGGAATCATTGTTATAGATGGTGATGACGATGACACGGATTCTAGAGATGATACTTCGGCTTATG TTAAACAGCCGGAAAGAACAAAGTGAAGGGCTGAGAATTAAGTTATAACCTGATTCTTTTTGTTCCTTAGCTTTCTTAGGAAATGCAGAGCAGTTCTTAA CACATTAGCTATAGATACTTGAAGATCTTAGTAATTAGGATTTATTTTTGCAGAAATTATTAAATCCTAAGATGTTTTTTGCATGATAAATAGTAACATT GAAGTGATGATTGCACACAAAAAAAACAATGCTCAACAATTAGCAACCAATATATAGCAGTAAAGGAAATGATAGGTCTATATTCTTATAGGTGAGGATT TCATTCATGTGAGAAACCTCAATCACTAATAAAAAATAATGGTTCATATTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_129799; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_325230
| Blastp | 30S ribosomal protein S6 from Nitrosomonas with 30.56% of identity |
|---|---|
| Blastx | 30S ribosomal protein S6 from Alcanivorax with 41.9% of identity |
| Eggnog | Binds together with S18 to 16S ribosomal RNA (By similarity)(COG0360) |
| Kegg | Link to kegg annotations (Neut_2382) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419062.1) |
| Pfam | Ribosomal protein S6 (PF01250.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |