| Id Trinity | TRINITY_DN38597_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_459092 |
| Sequence | GTACTTCTATTACAAAATGTTAGGCTGCAGAATAATGCGTAGTCAGAAGTTGACAGTGTCAACAAACACACACTGTTTGGTTTGTTAGACATTTTTCTTT TTCAACTACCCACTTTGCATGAATCATCTTCAACTCTAAATTTACAATTTTTCTTTCACATTTCCAATCCAATTCAATGCAATCCATGGCTTCCTCTCAC TTTCTCTGCATTAACAATGTCTTCCCCATTTCTCCAAATCCCTACAGAACCATCCATTTCCCTCAATTCACACCACTTGGGTCATCAAATTTTCACACTA AGCTTCACTTTCAGAGACCCAAGATTGTTAAAGCAATGATTTCTGATTCCAACCTTTCCAAGAAACAAGTAGAGGTTGTGTATAACCCTGATGAAAGGAT AAACAAATTGGCTGATGAAGTGGATAAGGAAGCTCCCCTTTCAAGGCTTACTTTGTTCTCTCCCTGCAAGATAAATGTTTTCTTGCGAATAACCGACAAG AGGGAAGATGGGTACCATGATTTGGCATCTCTATTTCATGTGATAAGTCTAGGTGACATAATTAAGTTCTCTTTGTCACCATCCAAGACCACCGATCGAC TGTCAACCAATGTGTCCGGGGTGCCGCTTGATGATAGAAATTTGATTATTAAGGCGCTTAATCTTTACAGGAAGAAAACTGGCAGTGAAAACTTCTTCTG GATTCATCTCGATAAACGGGTGCCTACAGGGGCAGGGCTTGGTGGTGGAAGTAGCAATGCTGCAACTGCACTATGGGCAGCTAATCAATTCAGTGGCGGT CTTGCCACCGAGAAAGAACTCCAAGAGTGGTCAAGTGAGATTGGATCAGATATTCCCTTCTTTTTCTCTCAGGGAGCAGCCTATTGCACTGGTCGAGGTG AGGTTGTTGAGAATATTCCTCCTCCAATATCTTTGGACCTTCCAATGGTTCTCATAAAGCCCCAACAAGCATGTTCAACTGCCGAAGTCTACAAGCGTCT AAAGTTGAACAAGGGCAGTAACATTGATCCTTTAACATTATTGGAGAAAATCAAAAGGGATGGGATATCACAAGATGTCTGTATTAATGATTTAGAACCT CCAGCATTTGAAGTTCTTCCATCTCTCAAACGACTGAAGCAACGGATTACTGCAGCTGGTCGCGGAGAATATGATGCTGTTTTTATGTCAGGAAGTGGAA GCACTATTGTCGGAGTTGGTTCGCCTGATCCTCCTCAATTTGTTTACGATGATGCCGAATACCGAGATGTATTTCTGTCAGGTAAGCTTCGGTAAATTAA GGCTTGGAAACTAAGTTCATCTCCATGATATATTGAAGCCCTAGTCTCATATGATTAAGCAGAGGTTCCACATTTTAGCATTAAAGTCCTGTTAAATATA AGCTGTTGGAAACTTAAGTTCATATCCTGAAAACAATCTTTTTACTTGCTCGGATAAGGCATGTATATTTACGGCTTGTGCACCAACTGTCTTTTTTATT ATGGAAGTTAAGAATGAGGTGAAAGAGATTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_130171; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_459092
| Blastp | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic from Lycopersicon with 78.96% of identity |
|---|---|
| Blastx | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic from Lycopersicon with 78.96% of identity |
| Eggnog | Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (By similarity)(COG1947) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440926.1) |
| Pfam | GHMP kinases N terminal domain (PF00288.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |