| Id Trinity | TRINITY_DN39409_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_524771 |
| Sequence | CAAAGATGGCTTTTGGATGGTGATTCGAATTCTAAATTATTCCATGCCTATATCAATCGAAGGAAAAGAATTAATGGTATTCATGGTTTGAACATCAATG GGGTATGGGTGGAGGACCCATAAGTGATTAAGGAGCATATTCGTTCTTTCTTCGCGGACAAATTCGCTGAATCCCACTAGAATAGACCAACACTTGACGG GATTGGATTCGACATAATTTCGGATAATTATAATGCCTACCTTACTGATAGGTTTGAGGAATCAGAGATTAAAAATGTTGCTTGGAGTTGTGAGGGGAAC AAAAGCTCGGGTCCTGATGGGTTTAATTTCACCTTTGTTAAAAGGTTTTGGGAGATGGTAAAGGTTTATATTTTGGCTATGGTGGATGATTTCTTTCGCT CGGGTAACCTTGCTAAAGGTTGTAATGCTTCATTCACTATTCTGATTCCTAAGTGCAACAATCCACAAGGTCTTGGAGAGTTCAGACCCATTTCCCTTGT TGGCTGTATTCACAAAATCATCTCTAAGCTTCTTGCTGGGCGTCTTAAGAAAATTATTCCCTCGGTTATCTCGGAGTGTCAGACTGCATTTATTCAGGGA AGGTATATTATGGATGGAGTTGTGATCGCTAATGAAATCATTGACCAAGCTAGAAGGAAAAAGAATGGGGATTTTTTTATCTTCAAGGTGGACTTTGAAA AAGCTTACGATTCTGTGAATTGGGGCTTTCTTCTGTATATGATGGAGAGAATGGGTTTCTGTCCCAAGTGGCGTAACTGGATAAAGAGTTGTCTTCAGTC GAACTCTGTCTCTATCCTGGTTAATGGGTGTCCTACCAGAGAATTTAACATGGCTAGGGGTCTGCGACAAGGAGGTCCTATTGCTCATTTTATGGGCCTT ATAGCTGCAGAGGGGCTTGCTGGGATTATGAGGCCAACAGTTGATAAGAATATTTTTAAAGGTTATCCGGTGGGAAAGGACGAGGTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_131013; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_524771
| Blastp | LINE-1 retrotransposable element ORF2 protein from Mus with 30.61% of identity |
|---|---|
| Blastx | Transposon TX1 uncharacterized 149 kDa protein from Xenopus with 25.78% of identity |
| Eggnog | NA(ENOG41120A8) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429814.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |