Ll_transcript_524634

• Id Trinity: TRINITY_DN39810_c0_g1_i2
• Name Transcript: Ll_transcript_524634
• Sequence: CGAGAGTATTATCATAAGAGAAAACAAATTAGAAGAAGAAGAAAGATGGCACAAATGGTTGCAATGCCTTTGGCCCCTTCACTCGCTCTCATCTCCAATC CCAAATCTCTTTCAACCAGATTCTCCATTTCTCTTCCTAACCCTCCCAAGGTTCAGGGATTGACCATAAGATGTGTTCGTGTTGGAGGAGTGGAGATTCC AAACAACAAGAGAATTGAGTTTTCATTGCAGTACATTCATGGAGTTGGAAGGAATATATCTCGTCAAATTCTATCTGATTTAAACATGGATAATAAAATC ACAAAGGAACTTACTGAGGAAGATCTCATTACTCTCAGGGATGAAGTTTCCAAATACATGATTGAAGGCGACCTGAGACGGTTTAATGCGCTTAATATAA GGAGACTGAAAGAGATCCAGTGCTACAGAGGAATAAGGCATATTCAAGGGCTTCCTTGCAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGG TAAGAGGGTTGCTATTCCTGGCAAGAAGAAGAAGTAAATTGCTTTTTCATAAATCGATTCGGAGTAATGAATGGATTCTTATGTTGTTTTTTGTTATCAT GTGTGTAAAAATCAACTTGTATTACACTTCTGTTTTAATTAAATCACTTGTAATTTCTTCTTGGAACTTCAGCTGAGTTTTCTTAGTGAATGCATCCTAT GAACAATGCTTTTCTAAGTTTTAAAGTTAGTGTGGGGCAACAGTAGATAAAGTCATGATCCTCTTGAGATCTGTAAGATCAGAAACTTCATTTTTTAGCA TATAGTCTGGAAATTATTCCTTGCTGCTCATTGGGTTTGTTCTTGTTATGCAAAATGGTGGTGTAGACCAGTACATAAATCGTGGGTATGTATGTTTTCT TGCTGCTGATTATTACTGTGGCAGGCTAATATAAAGTATTCAAATCTAGTAAGCCTTAAAGTTTTGCAAATGTCATAAAAATTTT
• Tissue: pods
• Gene name: LI_gene_131420;
• Additional information: details;

Expression of Ll_transcript_524634

FPKM

• PAB: 83.7
• PNAB: 177.9
• PS1: 110.5
• PS2: 85
• PS3: 93.3
• PW1: 222.2
• PW2: 178.7
• PW3: 122.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_524634

• Blastp: 30S ribosomal protein S13, chloroplastic from Arabidopsis with 73.89% of identity
• Blastx: 30S ribosomal protein S13, chloroplastic from Arabidopsis with 73.89% of identity
• Eggnog: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits(COG0099)
• Kegg: Link to kegg annotations (AT5G14320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416849.1)
• Pfam: Ribosomal protein S13/S18 (PF00416.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;