| Id Trinity | TRINITY_DN40093_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_361538 |
| Sequence | GCGGAGCTGTAAAGCCGAAGTACTCCCGCGGCTGAGCTCCTATTAGGATTAAAAATGTCGATTTCAACGGCCCGCCCCCTCATTAGCGTTTACACTGAGA AGAATGAGGCCTCAGGCAGCACCATCCATCTGCCTGCGATCTTCAAGGCTCCCATTCGCCCTGATGTCGTGAACTTTGTTCACCAGAATATGGCTAAGAA CCGTCGCCAGCCATATGCTGTAAATGACCAGGCAGGACACCAAACAAGTGCGGAATCATGGGGTACTGGTCGCGCCGTAGCCCGTATTCCCCGTGTTCGT GGTGGTGGTACTCACCGATCTGGCCAGGGTGCTTTTGGTAACATGTGCCGTGGTGGTCGCATGTTTGCTCCCACTAAGCCATGGCGCCGCTGGCACCGTC ATGTCAATGTTAACCAGAAGAGATATGCCCTGGTGTCTGCCATTGCTGCTTCTGGAGTCCCTGCACTTGTCCAGTCTAAGGGCCACGTTATTGACAACAT CCCAGAGCTTCCTTTAGTTGTCAGTGACAAGGTTCAGGAACTCGCCAAGACCAAGCAGGCTGTTGCTTTCCTGAAGAGCATCAATGCCTGGGCTGATATT GAAAAGGTTTACAAATCACGCCGTCTGCGAGCCGGTAAGGGTAAGATGCGTAACCGTCGTCGCATCCAGCGTCGTGGTCCCTTGATCATCTATGGTGCTG ACCAGGGTGTGGTTCGTGCATTCCGTAACATCCCCGGCGTTGACTGCATCCCCGTCGCAAAGATGAACCTGCTTAAGCTGGCCCCCGGTGGCCACGTTGG CCGTTTTATCATCTGGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_131737; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_361538
| Blastp | 60S ribosomal protein L4 from Sophophora with 76.08% of identity |
|---|---|
| Blastx | 60S ribosomal protein L4 from Sophophora with 76.08% of identity |
| Eggnog | One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity)(COG0088) |
| Kegg | Link to kegg annotations (Dmel_CG5502) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020225369.1) |
| Pfam | Ribosomal protein L4/L1 family (PF00573.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |