| Id Trinity | TRINITY_DN40601_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_308644 |
| Sequence | CCCGGCCCATTCTGTTTTGTTGATCACCCCTTTCGAGTTGTGAGCACTCTCTAAACCCTGTTTTCCCAAACACCCACACTACACAGTACACAGTACACAC ACTTCTTCACCAATTTCCACTCTTCATAATGGGAAAGAAGAAATTCATCGACAAGAAAAACTCCATCACTTACCAACTCATCGCTCGCGACTCCTCCGAC CCCTACTTCGACCCTGACACTCCCGGCTCGGACCGCGTCTTCGTCCGCGTCGATAACAACCCCGTCTCCGATTCCATCTTCGACGACGCCCCTGACGATG AAGACTACGCCGCCGCTGATGACGTCATTCAACGCCATGTCGCGGTTGATAAGGCGGCGACGTTGCCGGACGAGGTGAGGAAGGAGATTCTCGAGCTTGG TTTCCCCGACGACGGTTATAACTACTTGACTCATTTGAGGGAGATTAAGAACGCTGGTGGTGGTTCGTCTTTTCATCATAACCCTAAGTTTAGGTTTCAT GATGTTCCTCACGATGTTAAGGCATATGATGCTTCGAGGTTAAGAATTTCTGAAGTGGAGGGAGAGCCAGAGGAAAAGTCTATGTACACTGTTGCGTCGA GGACTAAAACTGTGAGAGTTCAGAAAGCAATTGATCCTGAAGTTGCTGTATTGCTTGATGATAGTGACTTGTCGCGGTTTGGCTCTGATGTTGAAGATTT GGAGGAAGACTTTGTTGTCCAAGCTAATCTCTATGAAGGCGAAGATGAGGAAAAAATAGAAGAAGCAGAGGACAAAGAGAGACATGATGTAACCTTGTTT GACGAATCTGCGGTAAATAAAAGCAATGTCCAAGCATTGCAAGTTTCTGCTCATTCCGAAGTTACAGGTGATATCAGTGATCAGCCAAGAGCTCGTCGTT TGTTGGATGAGCAATTTGATTTACTCGAAAGCAAAGAGTATGGAAGTGATGAGGATGAGGATTATTATGGACATTATCATGCTGAAGATGATTCCCTTGC TGGGATGCACAATCTCTCTCTTAATAATCGTGTGATGGGTGGTCCAGAGTTTGATGATAAGCTAGAGGAACCTGCTGCTGATGTGATTCAACGTTGCAAG GAATATGCTGAGGGTTATGAAGATGAAGATGGAGACAAGGATGTTGTACTTGTTGAAGAAAGTAGTGATGAATCAGAAGTTTGGGATTGTGAGACAATTG TTTCAACATACTCAAATTTAGATAACCATCCTGGAAGGATTGGAGCACATGAAGGATCTAGGAAAAAGAAATTGGCTCAAACTGTGTCTGGAGTCTTGAG TTCATCTAGTCAAATAATATCACTTAAAGGAAAAGATAAACTCCCTATAGACTTCTTGCCTGGTAGTAGAAAACCTACTACCGAAAACGTTAAAGGCCCG GACACAGCAAAAACTGAACAGTACAAGAGAAAAAAACATGGGCAAGAGTCAAAGGAAGAGAAGAAAGAACGGAAGGCTGCTGTGAAGGAGGAACGACATG AGGCGCGTCGCATAAAAAAGGAAATGAAGGGGCTTTATAGGGGTGAGGCGCACCGAGCACAGAGGGCTGCTGCTGTATCTGGTCCTTCTTCAATTCATCT CATGTAAGTTTTCAATTTTTAAAGTTTTGTTGAGAACTTTCTACAAAACAGGAAATACTGCTTTCTTGCTATGTATATGCCTACAAGACATTGCATTCTT TTAAAGCTTATAGGTGAAATTAGACCAACATAATCCTGTAAGAGCCGTTTTTCTGCCAAAATAGATGAAGAACTTGTGAGCATGAAAAACACTGGTTCAA TGGTGCTTAGGAGATAGGCTACCTTATTGCAGAATCATATATCATGTAATCAGCATTGCTATGATGTCTCATTTCCTGCACAATGCAATATGGCAATATA GCGGAGTTTTTTTTTGGTGAAGGATTATAATTGAGTTTGGTGGGGTTTCTTGATAAATATAAATTGTTTTAAGTAGTTATACCAATATATAAATATTTGA TATATTTTAATTTTAGAAAGTACCAATGTCTAACAAATTCAAGTATGGGCATAGGGTTGGTTTAGACAGGTTGAAGTCTAGTTAGAGATAATTATTGGAG TTTTGAAGCATTTCAAGTTTTTTGTCAGCACATCAAAATATTTCAAAATTTCTGGTCAGATTTTGGAATTTGTTTTAGACATCTCTGACAATCTGATAAA GGAAAATAGAAATGAGCAAGTTTATGGCTCACAAACCTTAATGTATCTAAATGGTTTAAAGAATTCTAAACAATGCTAATTGTGGTATTACAACCATCTA ATTAAAAATCTGTTTGTATTCATGTATGTAGATTGACCTTTAAAGTACTTTCACATTATGCCATTGACTAGGAATCTAGGATAGTAATGAACTAATAATT GAGTACATTAGATGCATTCTTTTTTATTTTATTATTTTAAAAATTCAGATAGAGGGTGAGTCTGGGGCAAGGTTGCTAGCTTTGTGACTTGAAGGTCATG GGTTCATATCCTCGAATTAGTTTCTTTGCCTGCTAGGGTAATATTGTTCGCATCTACCATCCCAAAATTATAAAGGAGTTGTGCTTAGTTAATTCAAAAG AGAATTAGAATTTAAAAGCTGAAAATAAATTGTATCATTGAGCTTGAATTAATGCTGTAAATTGATAGCCTGAATTTGTCTCTCAAACTTTCACTTTAAA TGAGGGCTCAAATGCTGTAGCTTATGTGATTTCATTATTGCTAACCTTGTTTTTCTTTTCCTGACTCTCTTCACAGGTAAGCTAAGTAAAAGTACCAGCT TGTCGTTCAATCTGTCTAGGTTCTATGATGTTTTCTTAAAATCTCTGCCACCACAATGACTGTTCTAGGCCTTTTCTTAAACAAGAATACGCATGGAGAG TTATGATGTTATTCTTGGTTATACAATCATGCAAAATTTTGTTTTATCTCCAAGGTAGTGTTTGGATGTTATTTGTAGATCAAAGTCCGGCAACCTTATA CTTTGTTTTGAACTTCATTATACACAAGGATATGCACTAATTTTCTTAAATTTCTAGTTCTAGGTGGTTGAGTTTGGTGGTTTTAATGAACATGGCCCTA GCAATCATGTTTATGTCTTTTGGTATTGATACATGCAACGGCCACTTACTGCTATTTAGAGAAATTGGAATTTTTGAGATAAATTATGATCACCCTCCTG AATCCAAGTATGAAAATACATAATCATATGTGCAGTAAGGGTTCAAGAGAGTCCTCAATCATATCTTAGTCCTCATTGTAGTATATGCTTCTCTTTTCAT GTTTTGGGTTCCATTACTTCACTTTTATGGTTTTTGATTCTTACTAATAGATATATAGAGAGAATAAATGTTGGAATTGCCATTACTTCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_132329; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_308644
| Blastp | Protein LTV1 homolog from Pongo with 26.71% of identity |
|---|---|
| Blastx | - |
| Eggnog | LTV1 homolog (S. cerevisiae)(ENOG410XP9T) |
| Kegg | Link to kegg annotations (100190824) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449558.1) |
| Pfam | Low temperature viability protein (PF04180.13) |
| Rfam | - |
| GO | - |