Id Trinity | TRINITY_DN41348_c0_g1_i3 |
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Name Transcript | Ll_transcript_417135 |
Sequence | CTTTCATACTGGCCCATCAAACCAATACCCTCTTTCAATAACAAAACAGCGCTCACCTCTTCACTCTCTCATTGCTATACCATCCCACCACCGTTCGCGG CGGCTCCCACCGATTCCGGCAACCATATTCGAATTTGTGACACTTTCTCAGTTGAAGTCTAGCAAAATCATATAATGCCCCGAAGGCCAAGAATTCATCG CCAACGACTCAAAACTTTGCCAATTGGATTCTCCCCTTTTGCACGTGCTCTTGCTCGTATGGACTCTAGTTCAACAGCGAAGTATCAAGCACGGGACTCA GAATTCATTGAAAAGCCTAACCCTAGCTCTGCTGGTGATGGATTTGCAGAGCAGCCTTCGGATGACGAAGCAGAACAGTCTGCTTCATCATCAGATGAGC AGTTTGATGGAGTTGTTCAAGCAGATTTTTCCTTTTTCGACCCTAAACCTGCTGATTTTCATGGAGTGAAGACCTTGCTGCAAACTTACTTGGATGATAA AGAATGGGATTTGAGTGGCTTTGTAGATTTGATTTTGGAGCAGACCACAGTAGGAACTGTTGTTAAGATAGAGGATGATGAGGATGAAGGACTTTTTGCT TGTGTTAGTGCTCTTAATTTATGGAGATATAGGGAGCAAAAATGCATTATGGAAGTCAAGGACTACCTCCGTAAAGCGTGCAAGGAAAAGGGTGTTGCTG ACAAATTGAGATTGCTTTTGGAGGAACAAGCACGTAATGTTGGTCTGTTGGTGTCACAGCGTGTAGTGAACCTTCCTCCCCAGCTTTTACCACCTCTTTA TGATGGTCTCTTTGATGAAGTGTCATGGGCCACAGAAGATGAGCCAACAGAGGACCTCCGGAAGTCCTTCCAGTTCAAGCATTATATAATACTTAGCAAA ATTTACAAACACAAGAATGCAGAACAGAAAAGAAAACTGAGTGATGATAGTGAGGAGGAAATGATATATATAAAGCCAGAGGACGAAATTTTTCACAAGT TAAGCTCGTGGTCCTTCATTTTTCCATTGCAACCTCAGCAGCCTGCACCTCATGAGGCAAGTTTTATGATTCTTGAATCTCAGTTAACATTATCGTGATG TTATTTAGACTTGCTGAAAGTTATTGGTTTTGGTCATTTTCTTAAAATACAGTGCTAAAGTGCCACCTCTGTTTCTAGGCAAAATACAGACTAAACTAGT CAAATACCTGTGCACTACACGGATTCGATCTTAATCTGTTCTAAACCTTAATTCAGTTCTCACAATAATCTCACCCATCACCAGTTTGGTCTTCATCATT CACATATCTAGATCATAATTCATAGCCATTTAATTCTCACTCATCTTATTATATTATGGCTGGTAAACAAAATAATGATTCAGTTCCATACTTTATTGAA TGGAATTATCATTTTCATGTTTGTCAGCATAAAATAAACTTACAGAAATTGTGGCATGCCTCAATCCATAGAATCAGAAGTCACTATCCATTATAGGAGT GGTTAGATTGTGGATTCCATACTCCATGTATAATAAGATTGACTTTTTCCCCAATCATAACCTTATTTATTTTCAAATATACTCATGTATTAAATTATTT TCAAATATTGATGTAAAATTAAAGATTAAAAACACTTCAAAAAGGTAGAAATGAGGGCTGAAACTGAAAGAAGATAAACATTGAGAAAGAGAAACTTAAC AGTGATGATGAAAAAAGGGTACACATATTTCAATGAAGATAGAGGAAATATTTAAAAATGAGGACAATTAATTAAAGATCCAATGGTATAAAATAAAGAA TTAATGAATCCAAAGCAAGAAAAATGAGGAGGGATTTATTATATCAAGATGGCCAATGATCAATACAGAATACAAGCCAAAAAGACTGAAGTCCATTTAT TTGTTACATTATTAACCTATCATGTTGTAGAAATGGTTTGTAATATCTTTTTTGTCCATTTATATGTTTATGTTTCTGCTTACTACAGCTGAAGAATTAC AAGCCAATGGGATTAGTTTTGGCTGTTGAGGCAGACAAAATTCCAACTTTCCGTCAAGAATTGGTTACTTTAATAAGTGAAACCTGAAAACAACCACAAG ATTCCTGCATAATTTATCACGTGATAGAGTCTTTAATAGTAATACTTTTCTGAATCTTCCCAAGTTTTTAAACCCCATCTTTCAGGTGTTTGAAATACCA ATTTTTGATAGTTATTTTTATTTATACTCTTATGGTCCCTTTTGTTCTGCAATGACTATTGATACTTCAGTTGCTTTTAGGCTGTGGTTAGTTTCTACAT TGCATTGATTATGAATGCCACCCTTTTC BLAST |
Tissue | pods |
Gene name | LI_gene_133214; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_417135
Blastp | Protein BCCIP homolog from Arabidopsis with 57.1% of identity |
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Blastx | Protein BCCIP homolog from Arabidopsis with 56.9% of identity |
Eggnog | Involved in nuclear export, actin cytoskeleton organization and vesicular transport (By similarity)(ENOG4111GYV) |
Kegg | Link to kegg annotations (AT2G44510) |
CantataDB | Link to cantataDB annotations (CNT0000597) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019462559.1) |
Pfam | p21-C-terminal region-binding protein (PF13862.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |