Ll_transcript_396327

• Id Trinity: TRINITY_DN41933_c0_g2_i1
• Name Transcript: Ll_transcript_396327
• Sequence: CTTGTCATCCTGTGTATTCTAGACTCGTACTTGTAAATTGAAACTACCAGTAGAAAATTTGTTTATATAAAAAATGTTCACTTTAAACTAAAATTAGACT ATGCATTCTTCTAAACCTTTCTATAATGCCAAGCCAACATAGAGTATTACTAAGATCAAATTTGGAATTCCTTCACCAATTCAATTTTAAACAATTTTTT CATTTTTCCAACTTATCATCCCATTCTCTTCAATCACATGATTCATATATAAATATTCTTCCACTCCCAAAACAACATGAAATTGGTCGTGAATTGGCCA AATTACTGCAATTACCATGCCCAAAGAATCCCACCCCATATTACTATAAGAAAATCCATACCCACATTGTGGTTTTGGGTTTTCAACATGATGTTTTCAT TATTAATACTTTCTTGCACTCATACTCAAAATGGGGTCTTATTAGTGATGCACAGAAACTGTTTGATACTATGCCTCATAGAAACCTGGTTACCTGGTCT TCTATGGTTTCTATGCATACTAAACATGGTTACAGTGTAGAAGCACTAGTGTCATTCTGCCGGTTCAGAAGGAGTTGCAATGAGAAACCAAATGAATACA TTTTAGCCAGTGTCATTCGAGCTTGTACGCAATTAGGTAGTCTTAGTCAAGCTCTGCAGGTGCATGGTTTTGTTCTTAAGGGTGGATTTGTTCAAGATGT TTATGTTGGTACCTCTTTGATTGATTTTTATGCCAAGCATGGTTATATGGATGAAGCAAGGTTGCTTTTTGATAGCCTAGAAGTGAAAACCACTGTTACC TGGACTACAATTATAGCAGGGTATTCAAAACAGGGAAGGAGTGAAGTGTCGTTCAAATTATTCAACCAAATGAAAGACGGTGATGTCTGTCCAGACAGAT ATGTAATTTCCAGTGTTTTGAGTGCTTGTTCAGCACTTGGGTTTCTTGAAGGGGGGAAACAAATCCATGGCTTTGTATTAAGGAGGAGAATTGATATGGA TGTTTCATTGCTCAACGGACTTGTAGATTTTTATTTGAAGTGCCACAAAGTGAAGACAGGCCGGATATTATTTGATCGGCTGGTAGATAAAAATGTTGTT TCATGGACCACGATGATTGCTGGTTGCATGCAAAATTCATTCCACTGGGATGCCATGAACCTGCTTGTTGAAATGGCTAGAATGGGTTGCAAGCCAGATG CATTTGCTTGCACTAGCATTCTCACTTCTTGTGGTTCACTTCAGGTTCTAGAAAAGGGAAGACAGGTGCATGCCTATACTATCAAAGCCAATATTGATAA TGATGATTTTGTGAAAAATGGTTTGATTGACATGTATGCAAAGTGTGATTTATTGACTGATGCAAGGAAAGTCTTTGACCTTGCTTCTGCTATCAATGTA GTATCCTACAATGCAATGATAGAAGGATATTCAAGACAAGACAAGTTGCATGAAGCATTGGATCTTTTTCGGGAAATGAGGCTAAGTTCAGTGCAACCAG TTCTATTAACGTTTGTAAGCTTACTTGGGCTATCTGCTTCCTTATTTCACCTGAAACTAAGCAACCAAATCCATGGCTTGATTATTAAATATGGGGTTTC TTTAGACAATTTTGCTGGAAGTGGTCTAATAGATGTTTATTCAAAATGCTTATGTGTTGGGGATGCAAGACTTGTTTTTGAGGAGATATATGACAAAGAC ATTGTAGTATGGAATGCAATGTTTTCTGGATATACCCAACAATTGGAAAATGAGGAAGCTCTCAAACTTTACAAAGATTTACAGTTGTCAAGACTAACAC CCAATGAATTCACTTTTGCTGCTGTAATCACGGCAGCAAGTAATATAGCGAGTTTGCGACAAGGTCAACAGTTTCACAACCAGGTTATAAAGATGGGTCT TGATGATGATCCCTTTGTCACCAATGCTCTAGTGGATATGTATGCCAAGTGCGGAAGCATTAAAGAGGCTAACAAGGTATTTAGTTCTACGAATCAGAGA GACATTCCTTGTTGGAATTCCATGATTTCAACCTATGCCCAGCATGGAGAAGCAACAAAAGCTCTTGAGGTGTTTGAACGCTTGATTAAGGAGGGACTAA AGCCAAATTATGTCACCTTTATAGGTGTGCTATCAGCATGTGCCCATGCTGGACTTGTTGATCTTGGATTTCATCATTTTGAATCAATGTCCCACTTTGG AATTGAAGCGGGAACAGAACATTATGCGTGCATGGTTTCTCTCTTGGGTCGAGCTGGTAGAATACATGAAGCTAAAGAATTCATCATGAATATGCCAATA AAACCAACAGCAGTAGTATGGAGGAGCTTGCTCAGTGCATGTAGAGCTTCAGGTCATGTTGAACTGGGAGCATATGCAGCTGAGATGGCAATTTCATGTG ACCCTGCAGATAGTGGATCATATATATTACTTTCAAATATTTTTGCATCAAAAGGTATGTGGTTAAATGTGAAGAGGGTGAGAGAGAAAATGGACATAAG CGGGGTAGTGAAAGAACCAGGTTGTAGTTGGATAGAAGTGAATAATGAAGTTCACAGGTTCATTGCTAGAGACACATCCCATCGTGACACCACACTTATA TCTTTAGTGTTAGATAATTTGATTTTGCATATCAAAGGTCTTGGTTCTGTGGCTAACACGGCTGCAATTTTGCTTAATGATCGAGATGAATCAATCATAA TGTGATTATATCACAATTAGGAAAGTTTTTGCTTTCCTCAAAAACTATGAAGTAAAATTTTGTGTACACTGCTTGCTACTTTGTTAAGGAATATTGGGCT TCAAACTGTTTTCATCCAGAAGATTCTTTTTACAAGTAAAGAATGTTAGTTTTGTGGTACATGTAAAGTTGAGCTCATTCTGTGTCAGCAAAGTATGTGA CTGTCTAGTGGTTTTTCCATTGCTTTGAATCATAGCAAGTTGGCAACCATATTCAAACTTTGTTGCCTCACATAACCAAAGACATGTTTTCTTGCAACTG ACAAATCAAGGGAAAAACAACCTTCAGTCCATTTAGCAGGCCAATACTCCTCCAGAATCCAGATCATAACTGGAATTATCCATTAAACTACTTGAAACCC AATCCAGCATAGACCCTATGAAGAAATTGCTTCTTTTACAAGAAGAATTGGTTCAAATCCAAACAAAAGAAGCAAGTGGACAGTCTCTCAAAACATGAAT ACTTGTCTCTGTTTTAGAAGGGCAATTGTGAGTTATTTAAAGTATTCATTACATAGATTCTGTTTTAAATAATAATTAATCAACTTTCTGTGTATTAAAT GTTTAATTAGATTAAATTTTTAAATAGAGCAATATTATTT
• Tissue: pods
• Gene name: LI_gene_133923;
• Additional information: details;

Expression of Ll_transcript_396327

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0.6
• PS2: 0.2
• PS3: 0.3
• PW1: 0.4
• PW2: 0.3
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_396327

• Blastp: Pentatricopeptide repeat-containing protein At4g39530 from Arabidopsis with 56.58% of identity
• Blastx: Pentatricopeptide repeat-containing protein At4g39530 from Arabidopsis with 56.58% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT4G39530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463554.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;