Id Trinity | TRINITY_DN42268_c0_g1_i2 |
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Name Transcript | Ll_transcript_373690 |
Sequence | AGGATGATGCTTACGTGCTTCACTTAGCCTAGTCATAATTCATTCTTCTCCGCCTTCCTACTCAAGAAAATAATATTGAAGTTTTATTAAACGAAAAAAT ATAAAACCCTTCTAAAACCCTCCTTAAACCACTTTCCTAGTACTTACCCCCATAAGCATGTGGACCCCAACGCCGGAGACGCTAGCTTCCACTAAAACCG CCCTTTCCGTTGCCGCTTCACTCGCCGCCACCGCGGTTCTCCTCCGATCTACCGTTAACGATCTCATACCTGATACCGTCTACAACTACTTCAACTCCAA CTTTCGCAAATTCTCTAACCGACTCTCCTCTCACCTCACCATCATCATCGAAGAACACGACGGTCTCACCGCCAACCAAATGTTTGACACCGCCAATGTT TATGTGGGATCCAAACAACAATCTTCAGCGCAAAGAATCAAGGTGCATAAGCCACTCAAAGAAGAGCATTTACAAGTTAACATTGACAAGAACCAAGAGT TTTATGATTCCTACAAAGGCATAAAACTCAAATGGGTCCTCGTTTCTATGCAAAACAACAACATAAATCTTCATAACAAGCGTGATAGTCACAACAATGC TTCATTTCATCGAGTTGAAGTGCGTCACTTTGAGTTAACCTTTCACAAGAAGCATAGAGACACGGTTTTGGGTTCTTACTTGCACCACGTTCTTCACGAG GCTGAGGCAATTAGAGAGGGCAAGAAAACTTTGAAACTTCACACCATTGATTACAATGGCACTGATTATTGGAACTCGATTGTATTAAACCACCCTGCCA CATTTGATACTGTGGCCATGGAACCTGAGATGAAAGTGCAACTGTTGGAAGATCTGTGTAAGTTTCTGGATAGGAAAGAGTATTATAAGAGAGTTGGGAA GTCTTGGAAACGAGGTTACCTTTTGTATGGCCCCCCAGGTACTGGAAAATCAAGCTTGATTGCTGCAATGGCTAACCATCTCAAGTTTGACATATATGAC ATGGATTTGAGGGAGGTGCAGTGTAATTCGGATCTTAGAAGGTTGCTTATTGGGACGGGAAGCCGATCAATTTTGGTGATTGAGGACATCGATTGCTCAG TAAAATTGCACAACCGGGAAGTAAATAATAATGGTGAAGATGAAGATAAGGTAACTCACCCATATATATAAATTAATTATTCACATTGTATCAATTTTTA TTGAGTAAATGTATATTCACTAATATATTAATGATCAGTCAATATTCTATCAGCTTAGTGCACTCAAAATGGATGCACATAGTTTATATACAAGATTGTG GTACCATTGATGCAATGTAACACTTTGATGTTGAGTTCACTCGAATTTGTTTGATCCTATCAAGGTTACTCTGTCAGGATTGCTAAACTTCATTGATGGA TTGTGGTCAAGCTGTGGAGATGAACGAATCATAATATTTACAACAAATTACAAGGATCGTCTTGATCCGGCATTGTTGAGACCTGGTCGCATGGATATGC ACATTCATATGTCTTATTGCTCTTTCAGTGGTTTCAAGACATTGGCGGCTAACTACCTACGAATTCAGAACCATCCCCTGTTTGAGGACATAGAGGGACT GTTGCACAAGGTTAATGCAACGCCTGCTGAAGTTGCAGGAGAGCTGATGAAAAGTGACAATACAGACAGTGCCATCAAAGGGCTCATCAGCTTCCTTCAA TGCAAGCAGCCAGGCATAACAACACCTTAAAGTAAGGTGTTTTCCTTATTTTTGAGCCAGAGGCAGCACCTTTTCAGTGTTATAGTTAGTATATTGTTTT AAGAATATTTCTTAGGAACAAGAATAGTTTATGTTGGAGATGTGATTGGATTTTAATAAGGGTTCTCTTAACTTTAACTTTAGCCTAAGAACCGAGGACA AGGTATTAAAAGTGATAAAAAGATTATTGACTTATTAAGAGAGAAATGAAAACTTTCCCCAATAGAATTCATTCATATGAACAGGGCATTAATGAGATGT TTATTAGAAATTTATAATTTCTAATTAAGGTGGGCATCATATATTTAATACAATTGTATCCGCT BLAST |
Tissue | pods |
Gene name | LI_gene_134369; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_373690
Blastp | Protein HYPER-SENSITIVITY-RELATED 4 from Arabidopsis with 48.49% of identity |
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Blastx | Protein HYPER-SENSITIVITY-RELATED 4 from Arabidopsis with 46.56% of identity |
Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
Kegg | Link to kegg annotations (AT3G50930) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019457304.1) |
Pfam | Domain associated at C-terminal with AAA (PF14363.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |