Ll_transcript_321799

• Id Trinity: TRINITY_DN42336_c0_g1_i1
• Name Transcript: Ll_transcript_321799
• Sequence: AAAAAACAAAAAATCATTTCTTCATTTCCTTCGAAAACGAAACCTAACATAGCTCACTCAGTTACAGAAGAAAAAAAGATTGAATTTTGATGATGTTCTC GCATACCCATTATCCCAAATAATCATAAAACGATGGGAATTAGTGGTAATTTCTGGGATTTGTTGAAACCCTATGCACGCAACGAAGGTTTTGATTTCTT GAGGAACAAGCGAGTCGCTGTGGACCTTTCCTTCTGGATTGTTCAACACAACAATGCTATCAAAACCCATGTTTCAAAACCACACCTTAGAAACACTTTC TTCAGAACCATTAATCTCTTTTCTAAGTTCGGAGCATTCCCGGTGTTTGTTGTTGATGGGACTCCATCGCCGTTGAAGTCACAGGCTAGGATTGTGAGAT TTTTCCGGTCTTCTGGCATTGAATTGAATAGCTTGCCGGTGCCTGAACAAGGTGTTTCAGCTGAGAGGAACCGTTCGTTTTCTAGATGTGTTCAAGAATG TGTGGTACATTACTTCTTTACCTTGATTGTTACCGTCGTCTTGAAATTATTCTGAAGATTCTATTTTGGCATTATTTGCTGCTAAATGTGTAAATTCATT CAATTTTTCTTCCAAAAATTCCTTCTATATTCTATATCAGGAACACTACTTCAGTTATTTACTTCCAAGATCTAGACGTAGTTTTTTATCTTTTAGAAGA CGTTGCTGTTAGTTCCATATTGTTTGGTTGCAGGAACTTGTGGAACTACTTGGTATGCCCGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCC AATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGATAGTGATGCATTCCTGTTTGGAGCCGAATGCATTATAAAATGTTTCCGCCCGAATTC CAAAGAACCATTTGAATGTTACAATATCTCTGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACAATTAATAGCTATCTCTCTTTTGGTTGGAAATGAT CACGATATGGACGGTGTTCGAGGAGTTGGGCTTGAAACTGCTCTTCATTTTGTTCAGGCATTCAATGAAGATGATATATTGAATAGATTACATGAGATAG GCAAAGGGAATGCGTTACAAGTTCCGATCAGCATTGAATCGGAAGACAATATGCATAAGGATTGGAACTCCCCAAATACAAAACATTCTCACTGCTCATT CTGTGGGCATCCAGGAAGCAAACGTGATCATATCAAGTTTTCCTGTAAATACTGTATATCAAATGATGGTGAAGGTTGTATACTAAAAGAAGAAGGTTTT AAATGCGATTGCTTCTCATGTGGTGTGTATAGGAAGCATAAGGAACAGAAAAGGGTGGAAAATTGGAACAAAAAAATTTGTCACAAAATTGCAGAGGAGC CAAATTTTCCCAATGATGAAATCATTAATATGTATTTATGTCGCGATAATGGACACTTTTCTGCAAACGGTGGCCCTCACATCACATGGGAGAGACCCAA TATTGGGATGCTGATTGATTTTTTAAACTTCCACCAGCGTTGGGAGCCGTCGTACATTCAACGGTTGATGTTTCCTATGATGTCCACCATGTTTTTGAGA GATAAAGCTTCTACTACTGTAGAAAGTTTGTTAATGGGGCAATATGAGTTTGATTCATTACATCGCACGAAGATTATATATGGATTTCAGTTTTATGTGG TAAAGTGGAAACGGGCAGCGGGAAATTTCACATACGCAATTCGCTCAAATGAGTCTGGCACGCAACAAGATGTTGTAGAGCTTGACAAATCGGTGGATCT ACTCGACGACTGTGATGTTCCTACGATTCACGTGGACGATGGGTGCAGTTTTTTGTTGACAGATGAAAATACGGACCTTGTAGGGGCTGCTTTTCCCGAA GAAGTTAAAAGGTTTCGGCACGAACAGGAACAGAAGGATTTGAAAAGAAAAAAGAATTCTACTTCAAGTTCTCAAGAATATGAGAATGAAAATTCAGCAT CACCAAACTCCAAAAGTATTCAACTCAACATTACAAAGTTCTACCCATCAACCAAAATTAAACACGAGTCAAAACAAGACGAGTCATCCAAGAAACGTGA TACCGAAGAGGGTGAAGCCTCGACGAAGAAAAGGAATGTGCCGAGTCCTAATCTCCCGAAATCGGTGAGGCGTCGCCTTTTGTTCGACTAGTATATATGC TTAAACTTTGGACATCTTGGCACTTGTGGAGGATGTTGAAGCAGTAAGACAATGAAGTTGTAAAGATTTGCATGGAAACCTTATATTCATGGTACAGTTT AAGGATTTGCAAGTTGGTTCTTGAATCTGTTTGATTCAGTAGCATGCATCATATGATTTTGTTAACCTTGTTAAATGTTGACAGAAATAATCATAATTTA AAAATAAAAATAATAACTTCACCCTTCAAATCCCA
• Tissue: pods
• Gene name: LI_gene_134462;
• Additional information: details;

Expression of Ll_transcript_321799

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.1
• PS2: 0.3
• PS3: 0.5
• PW1: 0.2
• PW2: 0.2
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_321799

• Blastp: Flap endonuclease GEN-like 1 from Oryza sativa with 47.25% of identity
• Blastx: Flap endonuclease GEN-like 1 from Oryza sativa with 47.58% of identity
• Eggnog: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity)(COG0258)
• Kegg: Link to kegg annotations (4347617)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414179.1)
• Pfam: XPG I-region (PF00867.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;