Ll_transcript_321800

• Id Trinity: TRINITY_DN42336_c0_g1_i2
• Name Transcript: Ll_transcript_321800
• Sequence: AAAAAACAAAAAATCATTTCTTCATTTCCTTCGAAAACGAAACCTAACATAGCTCACTCAGTTACAGAAGAAAAAAAGATTGAATTTTGATGATGTTCTC GCATACCCATTATCCCAAATAATCATAAAACGATGGGAATTAGTGGTAATTTCTGGGATTTGTTGAAACCCTATGCACGCAACGAAGGTTTTGATTTCTT GAGGAACAAGCGAGTCGCTGTGGACCTTTCCTTCTGGATTGTTCAACACAACAATGCTATCAAAACCCATGTTTCAAAACCACACCTTAGAAACACTTTC TTCAGAACCATTAATCTCTTTTCTAAGTTCGGAGCATTCCCGGTGTTTGTTGTTGATGGGACTCCATCGCCGTTGAAGTCACAGGCTAGGATTGTGAGAT TTTTCCGGTCTTCTGGCATTGAATTGAATAGCTTGCCGGTGCCTGAACAAGGTGTTTCAGCTGAGAGGAACCGTTCGTTTTCTAGATGTGTTCAAGAATG TGTGGAACTTGTGGAACTACTTGGTATGCCCGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCT TGCATCACAGCTGATAGTGATGCATTCCTGTTTGGAGCCGAATGCATTATAAAATGTTTCCGCCCGAATTCCAAAGAACCATTTGAATGTTACAATATCT CTGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACAATTAATAGCTATCTCTCTTTTGGTTGGAAATGATCACGATATGGACGGTGTTCGAGGAGTTGG GCTTGAAACTGCTCTTCATTTTGTTCAGGCATTCAATGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCGTTACAAGTTCCGATC AGCATTGAATCGGAAGACAATATGCATAAGGATTGGAACTCCCCAAATACAAAACATTCTCACTGCTCATTCTGTGGGCATCCAGGAAGCAAACGTGATC ATATCAAGTTTTCCTGTAAATACTGTATATCAAATGATGGTGAAGGTTGTATACTAAAAGAAGAAGGTTTTAAATGCGATTGCTTCTCATGTGGTGTGTA TAGGAAGCATAAGGAACAGAAAAGGGTGGAAAATTGGAACAAAAAAATTTGTCACAAAATTGCAGAGGAGCCAAATTTTCCCAATGATGAAATCATTAAT ATGTATTTATGTCGCGATAATGGACACTTTTCTGCAAACGGTGGCCCTCACATCACATGGGAGAGACCCAATATTGGGATGCTGATTGATTTTTTAAACT TCCACCAGCGTTGGGAGCCGTCGTACATTCAACGGTTGATGTTTCCTATGATGTCCACCATGTTTTTGAGAGATAAAGCTTCTACTACTGTAGAAAGTTT GTTAATGGGGCAATATGAGTTTGATTCATTACATCGCACGAAGATTATATATGGATTTCAGTTTTATGTGGTAAAGTGGAAACGGGCAGCGGGAAATTTC ACATACGCAATTCGCTCAAATGAGTCTGGCACGCAACAAGATGTTGTAGAGCTTGACAAATCGGTGGATCTACTCGACGACTGTGATGTTCCTACGATTC ACGTGGACGATGGGTGCAGTTTTTTGTTGACAGATGAAAATACGGACCTTGTAGGGGCTGCTTTTCCCGAAGAAGTTAAAAGGTTTCGGCACGAACAGGA ACAGAAGGATTTGAAAAGAAAAAAGAATTCTACTTCAAGTTCTCAAGAATATGAGAATGAAAATTCAGCATCACCAAACTCCAAAAGTATTCAACTCAAC ATTACAAAGTTCTACCCATCAACCAAAATTAAACACGAGTCAAAACAAGACGAGTCATCCAAGAAACGTGATACCGAAGAGGGTGAAGCCTCGACGAAGA AAAGGAATGTGCCGAGTCCTAATCTCCCGAAATCGGTGAGGCGTCGCCTTTTGTTCGACTAGTATATATGCTTAAACTTTGGACATCTTGGCACTTGTGG AGGATGTTGAAGCAGTAAGACAATGAAGTTGTAAAGATTTGCATGGAAACCTTATATTCATGGTACAGTTTAAGGATTTGCAAGTTGGTTCTTGAATCTG TTTGATTCAGTAGCATGCATCATATGATTTTGTTAACCTTGTTAAATGTTGACAGAAATAATCATAATTTAAAAATAAAAATAATAACTTCACCCTTCAA ATCCCA
• Tissue: pods
• Gene name: LI_gene_134462;
• Additional information: details;

Expression of Ll_transcript_321800

FPKM

• PAB: 2.6
• PNAB: 7.3
• PS1: 8.8
• PS2: 4.6
• PS3: 7.7
• PW1: 4.4
• PW2: 3
• PW3: 2.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_321800

• Blastp: Flap endonuclease GEN-like 1 from Oryza sativa with 50.23% of identity
• Blastx: Flap endonuclease GEN-like 1 from Oryza sativa with 50.23% of identity
• Eggnog: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity)(COG0258)
• Kegg: Link to kegg annotations (4347617)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414179.1)
• Pfam: XPG N-terminal domain (PF00752.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;