Ll_transcript_351772

• Id Trinity: TRINITY_DN42522_c0_g1_i1
• Name Transcript: Ll_transcript_351772
• Sequence: TTCTTTCTAAACCCTCATTTCTCTCTAAACCCTGCTTTCACTCTCTCTGTGTTCCGCTTCAAGCCAGTAACTAGCAAGTAACTGCTCTGAGAATCAGAGA CATGGCACCACATTCTAAAACCTCACACAACAACAAGAACTCAGAAAACAAGCCAAAAATCGATAAATCCTCTAAGAAAATTTCCAAACCTAAACGGGAC GATGCTGCTGCCACAACTGCTAAGTCTTCAGCACTCGCTTTGCAGCTCCAAGACGAAGTCCCCGATTTTCCTCGAGGTGGACCTGTTACTGGGAAGCGAA GGAACGTTAGAGAAGATTATGATGATTCTGACGGTGATAATTACTCGAGAAAGAAGCAGAATAAGAAGAAGGGTAGTAATTTGTCGAAGAAGAATGCTGA ACCTGAAGATGATTGGGGCTCGCTTTCAAGTGATACTATCACTGGGAAACTACCTAGACGTGTGAATAAAATTACTCTCAAGAATATAACTCCTGGAATG AAGCTTTGGGGAGTTGTTGTTGAAGTAAATGCGAAAGACCTTGTAGTTAGTTTACCTGGGGGTTTACGTGGTTTAGTTCATGCTTCAGATGCAGTGGATC CTATTTTCGATGACAAAATCGAGGTTGGGGAAAGTTTTCTTTCTACTGTATTTTCTGTTGGGCAGCTGGTTTCTTGTGTGGTTCTGAAATTGGATAATGA CAAGAAAGAGAAAGGAACCAGAAAAATTTGGCTTTCGTTGCGTCTTTCATTGCTGCACAAGAACTTCAACCTAGATGTTGTCCAGGCAGGCATGGTCCTT GCTGCATATGTGAAAAGTATTGAAGATCATGGTTACATTCTTCATTTTGGTCTGCCTTCTTTCACGGGGTTCTTGCCGAAAAATAGCTCAACTGAAGGCC TAGGAAGTGAATTGAAAGTTGGGCAACTTCTGCAGGGGCTGGTCAGAAAAATTGATAAAGTTCGTAAAGTGGTTTACTTGAGTTCTGACCCTGATACATT GTCCAAAAGTGTGACCAAGGATCTGAAAGGTCTATCAATTGATCTTCTAGTTCCAGGAATGATGGTCAATGCCCGTGTGAAGTCAATCCTTGAGAATGGT GTCATGTTATCATTTCTCACATACTTCACTGGAACTGTTGATATTTTTCATTTGCAAAACATTTATTCAGCCTCAAACTGGAAGGATAAGTACAGTGAAT CTCTGAAGGTTATTGCTCGTATATTGTTCATTGATCCATCAAGTAGAGCTGTTGGTTTGACACTGAATCCACATCTTGTTCAGAACAAGGCCCCTCCTTC TCATGTTAAAATTGGAGATATATATGATGACTCAAAAGTTGTCAGGGTGGATAAAGGATCAGGACTACTGCTTGAGGTTCCATCAATTCCAGAGTCAACT CCTGCTTTTGTCAGCATATCTGAAATTGCTGAAAAGGAGATCAAAAAGCTTGAGAAGATGTACAAAGAAGGGAATCATATCCGAGTTCGAATTCTTGGGC TAAGGCATTTGGAAGGACTTGCTACAGGAGTTTTGAAGACTAGTGCTCTGGAAGAAGTAGTGTTTACGCATTCTGATGTCAAGCCAGGAATGGTGGTGAA GGCTAAGATTCTTTCAGTTGATAGCTTTGGTTCTATTGTGCAAATTCCTGGTGGTGTGAAGGCACTTTGTCCACTTGCTCATATGTCTGAATTGGATATT GCAAAGCCTGGAAAAAAATTCAAGGTGGGAGCTGAATTGGTTTTCCGTGTGCTTGGTTGCAAATCAAAAAGAGTGACAGTGACACACAAGAAAACTCTTG TGAAATCAAAGCATGCGATTATTAGTTCATATGGGGATGCTACTGATGGTTTGATAAGTCATGGATGGATAGCAAATATCGAATTGCATGGGTGCTTTGT ACGGTTTTACAATGGGGTCCAAGGTTTTGCTCCTAGATCTGAGCTTGGATTAGAGCCAGGAGTCGATCCTGGTACAGTGTATAATGTTGGACAAGTAGTC AAATGCCGGGTAATTAGCTCCATTCCTGCTTCACGGAGGATCAATCTTAGTTTCATAATAAAGCCAACAAGGGTTGTTGAAGGTGATACAGTTAGGTTGG GCAGTCTTGTTTCAGGAATTGTTGATCGAGTAACAGCCAATGCAGTAGTTGTTCATGTTAATGCAAGTGGTATCTCATGGGGTACAATATCTACTGAACA CTTGGCAGATCATCATGGGCAAGCTAATTCTATGAAGTCAAAATTGAAACCTAAATACAATTTTGATCAACTTCTGGTTCTAGATATTAAGGGGAACAAT TTGATTCTGTCTGCTAAAGCTTCCCTTATTAAATATGCTCAACATATTCCTGCTGATATCAGTCAGATGCAACCCAACTCAGTTGTGCATGGCTATATTT GTAACCTAATTGAGACAGGCTGCTTTGTCCGTTTCCTTGGTCAATTAACTGGTTTCGCTTCAAGAAAAATGGCTGCAGATGATCAGAAAACCAATATTTT GGATGCTTATTATGTTGGGCAATCAGTTCGCAGTAATGTATCCAATATAAGTAGTGAAACTGGTAGAGTGACACTCTCTCTAAAGCAGACGTCATGTTCT TCTACAGATGCATCATTTATTCAAGACTACTTTCTTATGGATGAAAAGATTGCTAAGTTGGAGTACTTGGGCTCTGGTGCATCTGATTTGAAGTGGGATG AGGGATTTAACATTGGTACAGTTGTTAAAGGTAAAGTTGCGGATGTTAAAGATGTGGGAGTTGTTATAAGCTTTGAGAAGTACAATGATGTTATTGGTTT TATCACCAATTACCAGTTGGCTGGCACCACAGTGGAGAAAGGCTCTGTTGTGGAAGCATTGGTTCTTGATATTGTGAAGGCAGAACCGCTTGTTGATTTA ACTCTAAAACCAGATTTCTTTAAAAAATCTAAAGAACGAAGTTCCACAAGTAAAACCAACAAGAAGAAACGTCGAAGAGATGCATCGAAGGACTTGGTTT TGCATCAGTCAGTGAATGCAGTGGTCGAAATTGTGAAAGAAAATTACTTGGTTCTATCGATTCCGGAGAATAATTACACTATTGGATATGCATCCATATC TGACTATAATACTCAAAAGTTTCATAGGAAACAATTTCAAAATGGACAAAGTGTTACGGCCACTGTTATGGCTCTTCCAAGCCCGGAATCATCAGAAAGG TTACTTTTACTTCTTAATGAGGTCAACGAGACATCTAGCTCTAAACGGTCCAAGAAGAAGTCTACCCATCAAGTGGGATCTTTGGTTGAGGCAGAGATTA TTGAAATCAAATCTCTTGAACTCAAATTGAAGTTTGGCTTTGGTTTGCATGGTCGGGTTCACATAACAGAGGTACATGATGCAAATGATTTAGAAAATCC ATTCTCTAGTTACAGAATTGGGCAAACACTGACCGCAAGGATTGTTGCAAAGCCTAATGAAAAAAGTGGAAAACGGATGGGTTCACAGTGGGAGCTATCA GTCAGACCTAAACTGATTGCAGGATCTGGTGATATAGTAGACATTGTATCTGGAGATCTTGACTTTAAAATTCGGCAATCTGTGGCTGGTTATGTGTACA AGGTAGAAAACGAATGGGTCTGGTTGACATTATCACGGAATGTGAGGGCTCAACTATACATTCTTGATAGTGCTAGTGAACCGAGTGAGCTTGAGGATTT CCAAAATCGATTTCATGTTGGGAAACCTGTTTCTGGTCATGTTCTGACTATCAACTTGGAGAAAAAGCTACTGCGGTTGGTTCTACGTCCCTTTTCTGCT CTCCCAGGTGCAATTAGTGAGGAGCTGCAAGTGGATGGTATCAATAAGGAATTAACAGCATACATTCACAAAGGAGATGTTTTAGGTGGAAGGATTTCCA AAATACTTCCAGGTGTTGGTGGATTGCTTGTTCAAGTTGGTCCTCATATATATGGAAAAGTACATTTTACAGAACTTACAGATACATTGGTGCCCGACCC TTTGTCTGGATATCATGAAGGGAAGTTTGTGAAATGTGTAGTTCTTGAAATCAGTCACACTGTTACGGGTACTGTTCACATTGATTTGTCCTTACGTCCT TCAAATGGGATGCTGTCTGAGGATTCCGAAGATGCTCACAGCATTGTGGATCTTAATAGCAAACCTGTGGAAAAGATTGAGGATCTTCATCCTGATATAA TCGTAAAGGGTTATGTTAAGAGTGTCACACCAAAAGGATGTTTCATTATGCTCTCACGAAAAATTGATGCCAAAATTCTTCTATCGAATCTGTCTGACGA ATATGTTGATGATCTTGAGAAAGAATTTCCTGTTGGAAAGCTTGTAACTGGAAGGGTTATATCTGTGGAGCCTCTTTCTAGTCGCGTTGAAGTTACATTG AAGACGACAAGTGGTTCCAGTAAATCCAAGTCTGTGAATATTGATTTCAGTAAATTTCACATTGGAGATGTCATATCTGGCAGGATTAAGCGGGTTGAGT CATTTGGTTTATTTGTTGCAATTGACAACACTGACATGGTTGGATTGTGCCATATCTCAGAGGTTTCTGATGACCGTATTGATGACATTGAATCAAAGTT TAGAGCTGGAGAGAAAGTAAATGCCAGAATATTGAAGGTGGATGAAGAAAGACACAGAATTTCTCTGGGAATGAAGAGTTCGTATATGGGAGATGATTCT GATCTTGAAATGACTTCTGAGCAAGGTTCAGAAGAAGATCCTGTTCCAGATAGTTCTTTGCTGGAAACCTATAATAAAGATATTGAAGATGATCAAATCC CAATTCTTTCACAAGCAAAAGAAAGGGAATCTATCCCTCCACTTGAAGTTGTGCTTGATGACCTTGATGAATTTGATGTCAGTAACAATAATACTCAAAA TGAAGTACAAGCAAATGAAAAAGCCACTATAGATGAAAAGCAGAAGAAGCGTGAAAAAATAAAGGCAAAGCAGGAGAGGGAGAAACAAATAAGGGTTGCT GAGGAAAGGTTACTGGAGGAGGATATACCAAGAACAGCTGATGAGTTCGAAAAGGTGGTCAGAAGCTCTCCGAACAGCAGTTTCATCTGGTTAAAGTACA TGGACTTCATGATTTCTCTGGCTGATGTTGAGAAAGCCCGCTCAATTGCTGAAAGGGCTTTGAGGACAATAAATATCCGCGAAGAGAATGAGAAGCTCAA CATCTGGAAGGCCTACTTCAATTTGGAAAATAAATTTGGAAACCCTAAAGAGGAGGCCATAATGAAAGTCTTCCAAAGAGCTTTACAGTACAATGATCCC AAAAAAGTCCATCTAGCACTTTTGGGAATGTATGAAAGGACTGAGCAGCATGATTTAGCTGATGAACTCTGCAATAAAATGACAAAGAAGTTCAAGCATT CGTGCAAAGTATGGTTGAGGTCTGTACAAAGCCTTTTGAAGCAAAGGCGAGATGGAATTCAAGCCATTATCAATCGTGCATTGTTAAGCCTTCCCCGACA TAAGCACATTAAATTCATTTCTCAGGCAGCTATTCTTGAATTCAAGATCGGGGTTCCTGATCGGGGTCGATCTCTGTTTGAAGGAATTTTACGGGAATAC CCAAAGAGAACAGACTTGTGGAGTGTTTATCTTGATCAAGAAATTCAACTCAAAGATCCCGATGTAATTCGCGCACTGTTTGAAAGGGCAATTAGTCTAA GTCTTCCAGCTAAAAAGATGAAGTTCTTATTTAAAAAGTATCTCGAATATGAAAAGTCCCAAGGCGATGAAGAACGAATCGAATCGGTGAAAGGGAAAGC AATGGAATATGTTGAACGTACTGTGTCTTAAGGCAAGATTCAGCATTGAGGTTGTAGGCATTATTGAGTTGCTGGAGATCTGGAGACAATGTGTTGTGTT TGTTAAGGGCATGGTAATGAAGCTGTAGGCATTCTAAGTCATTCTCTAACGTGATTTAATCTTTGTTGATGGTTCTAAATTTAGTGATTCTGACACTACT TAATGGTGCTAATTGAGATATCAACTGCATTAAGTGTATGGATTAAAGAGAGCTTATAAGCTAAAATGGAGATCTTATTAGTTGAAATGTAGACCATTTT GATCTGTCATTGGCCCAATTTTTGTTTTTCAGTTTGGGCCATAATCACTTGTTTTGACACTTAGGTTCTTGGTATTCAAATGATATTGTTTTTGGGGTTT ACATGGATTATTATGTCAGACAATGTTGTAAGGTTTTGATAGTGTTTAATAACTTAATTTAGAGAATGTCACAATTATTCTATATATTCACTTTTGTTTT GTTTGAAAATCTGTTAAC
• Tissue: pods
• Gene name: LI_gene_134705;
• Additional information: details;

Expression of Ll_transcript_351772

FPKM

• PAB: 0.1
• PNAB: 8.7
• PS1: 5.4
• PS2: 7.2
• PS3: 7.8
• PW1: 4.1
• PW2: 3.1
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_351772

• Blastp: rRNA biogenesis protein RRP5 from Arabidopsis with 60.31% of identity
• Blastx: rRNA biogenesis protein RRP5 from Arabidopsis with 59.79% of identity
• Eggnog: thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539)
• Kegg: Link to kegg annotations (AT3G11964)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434480.1)
• Pfam: S1 RNA binding domain (PF00575.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;