Ll_transcript_351779

• Id Trinity: TRINITY_DN42523_c0_g1_i4
• Name Transcript: Ll_transcript_351779
• Sequence: AATTTATTGATTGGGGAAAAAATGCACAAGAAGGTTCTATTTATCCAAATAATGTATTTCCCTCTCTGAAGAAACAAAATGAAGTAGCTCATCACTGCAC CAAACATGTCTCTTTTCAAATCATTCACTTCAAATTCTTCTGCTTTCAAACCCATGGAAACAACCATGGCTATGTTCATGCACATTTCTTCCTACAGGGT ACTCTCCCGTACTGTTTGTTCATCCTCCAGGAGAACTAGTTCTTCTGGCTTATTTAATTCCCGGGGAATATCGTCAGTTAAAGTGCTTTCTCTTTCAAAC ATGTCAAACTACTGTACTCATTCAAGGGATGAGATTTCTTCTTCAAAGCGAAGATCACGAGGGCCTGTTATGGCCGGAAAAAAGGCTGCAGAAGGAACAA AGCAAGAAGATGGTAAATACAAGCACACAGTCGATCTTCCCCAGACAAAATTCGGCATGAGAGCGAATTCTTCAGTAAGGGAGCCTGAAATTCAGAAAAT GTGGGAGGAGAATCAAGTATTTCAGAAAGTTGTTGACAAAAATAGTGGAGGAAATTTTGTTCTTCATGATGGCCCTCCATATGCTAATGGTGACCTTCAT ATTGGCCATGCCTTAAATAAAATTTTGAAGGATATCATAAATCGCTATAAGCTCCTTCAAAACTATAAAGTTTACTATGTGCCCGGATGGGATTGTCATG GCCTACCAATTGAATTAAAAGTTTTACAGTCACTGGATCAGGAGGCTAGAAAAAATCTCACACCATCGAAGTTGAGAACAAAGGCCGCTAAATTTGCCAA AGAAACTGTTAAAACTCAAATGTCATCTTTTAAGCGCTTTGGAATATGGGCAGACTGGAATAATCCGTATCTCACTCTAGATCCAGAATATGAAGCTGCC CAGATTGAAGTATTTGGCCAGATGGCCTTGAAAGGCTACATCTACAGAGGTAAAAAACCCGTACACTGGAGTCCCTCGTCACAAACAGCACTTGCTGAGG CTGAGTTGGAGTATCCTGAAGGGCATGTTTCGAGAAGCATATATGCCATTTTCAGAGTTGTCAGTGCTCCTCAAATGTCAAGTGACCTACTACAAGAATT TCCAAATTTATGCTTGGCCATATGGACTACAACTCCCTGGACTATTCCTGCAAATGGAGCTGTTGCGGTAAATATGAAGCTTGAATATGCTGTTGTTGAA GTAGAGCCATTAATAGAACATGTCTCGTCATCTGTCGAAACCAGAAAGAAAAGGCTTGGAAATGTTTTGAAGGATGAGAAGAAGCTGTTTCTTATTGTTG CTTCAGAACTTGTGCCAAAGTTAGAGGCGAAGTGGGGTGTGAAGCTTGTTGTCAAGAGAAAGCAGCTGGGTTCTGACTTGGAAAACTACAGATACATCCA TCCAATAGATAATGCGGAACGGCCAGTTGTAATTGGAGGAGATTATATTACGACAGAAGCAGGAACAGGACTGGTCCATACAGCTCCTGGACATGGTCAG GAGGATTATGTGACTGGTCAGAAGTATGGGCTACCGATAATTTGTCCGGTAGATGAGAACGGGATATTTACTGAAGAAGCCAGACAATTTAGTGGGCTTG ATGTTCTTGGTGAAGGTAACACTGCTGTTGTGAAATATTTGGATGAAAATTTGTCACTCATCATGGAAGAATCATATGAACACAAGTATCCATATGATTG GCGTACAAAAAAACCTACAATATTTAGAGCAACAGAGCAATGGTTTGCATCAGTAGAGGGATTTCGCGATGCTGCTATGGATGCTATTGGCCATGTAAAA TGGGTTCCACCTCAGGGAGAAAATAGAATCTCGGCAATGACTTCGAGTCGCTCTGATTGGTGTATATCACGACAAAGGACATGGGGTGTCCCTATTCCAG TTTTTTATCATCTGCCATCCAGAGAACCTCTCATGAATGAAGAGACAATTGACCATGTCAAATCTATTATATCCCAAAAGGGAAGTGATGCATGGTGGTA CTTGCCAGTAGAGGAACTTCTACCACCTAAATACCGTAATAAAGCAGCTGAATATGAAAAGGGAACTGACACAATGGATGTATGGTTTGATTCAGGTTCC TCTTGGGCTGCAGTCTTGGGTAAAAGAGGTCCCCTTAGCCTTCCTGCAGACTTGTATCTTGAAGGAACAGATCAACATCGAGGGTGGTTTCAGAGTTCAT TGTTAACCAGTATAGCCACACGAGGGAAGGCTCCATACTCTTGTGTTGTAACACATGGATTCGTATTGGACGAGAAGGGCTTAAAAATGAGCAAGTCTTT GGGTAATGTTGTGGATCCAAGAAGTGTCATTGAAGGAGGTAAAAATCAGAAGGAAGCACCTGCATATGGAGCTGATATTCTGCGACTCTGGGTTTCTAGT GTAGATTATACAGGTGATGTGATGATTGGCCCTCAGATTATTCGTCAAATGTCTGAGATTTACAGGAAGTTACGGGGAACTTTGAGATACCTCTTGGGAA ATCTTCATGATTGGAAAACAGATTATACTGTTCCATACCATGAACTTCCTAGGATTGATCAGCATGCACTATTTCAGCTTGAAAATGTTGTAAAAAACAT TCAAGTGAATTATGAAAGTTACCAGTTTTTCAAAATATTTCAGATTTTACAGAGGTTTGTCATTGTTGACCTGTCAAATTTCTATTTCGATGTTGCCAAA GATCGACTATATGTTGGTGGATCAACAAGTTACACAAGGAGAAGTTGCCAAACAGTTCTTGCAGCTCATCTCCTTTCCATTGTGAGAGTAATAGCACCAA TATTGCCCCATTTAGCTGAGGATGTGTGGCAGAATCTTCCTTTTCAGTATACCGCTGAATATGGTTCTGTTGCTGAATATGTATTTGAATCAAGATGGCC CACCTTGAATGAAAGATGGCTTGCATTACCTGCTGAAGAAATTGAGCTCTGGGAAAAGATTCTTGAGCTGAGAACAGAGGTGAATAAAGTCTTGGAGGTT GCTCGTACTGGAAAGTTAATCGGTGCCAGTTTAGATGCAAAGGTTCATATTTATACATCAGATGCCAGCCTAGCATCCCAACTATCTGAACTATCTGCAG CCAAAACTGATGCCGATACATTAAATCGTCTATTCATAACATCTCAGGTTGAAATTCTTTCTTCATTGGAGGATGAACATAATGCAAATATACCATATAG TGGTGAATGCTTAATTCAGGGAAAGAGTAAAGTATGGGTTGGAATATCTAGTGCTGGTGGTTCCAAGTGTGAAAGATGTTGGAATTATTCAGAGCATGTT GGTTCATTTTTGGACCACCCTACCCTTTGCACACGCTGCCATGATGTTGTTGCTGTTCAGATGCCCCCTCAAGTAGCTCTAGCCACTTAAGGTTTTAAAG GGCATAAAATTTGTTTGGATTTTAACTTCAATTTTGTTTTCTAATTATAAAAATATTATCATTCTTGGATTTTAAATTTACCCACTTATTATTCTTGGAC ATTAATGTTATCAATAAATCAAAGTTCAACTCTTTTCCATCTCCTAAATTGATTTGCAGATTTGCAGATATGCCAATGACAGTTTGTGTAGTTCCTGTAG ACTACATCATAAAAAATGTGC
• Tissue: pods
• Gene name: LI_gene_134706;
• Additional information: details;

Expression of Ll_transcript_351779

FPKM

• PAB: 3.8
• PNAB: 15.5
• PS1: 8.2
• PS2: 5.1
• PS3: 6
• PW1: 10.8
• PW2: 9.7
• PW3: 7.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_351779

• Blastp: Isoleucine--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 74.68% of identity
• Blastx: Isoleucine--tRNA ligase, chloroplastic/mitochondrial from Arabidopsis with 74.68% of identity
• Eggnog: amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) (By similarity)(COG0060)
• Kegg: Link to kegg annotations (AT5G49030)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439298.1)
• Pfam: tRNA synthetases class I (I, L, M and V) (PF00133.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;