Ll_transcript_524001

• Id Trinity: TRINITY_DN43091_c0_g1_i3
• Name Transcript: Ll_transcript_524001
• Sequence: TCTCATCCAACCCACTTTCTCTTGCTTTTTCATACACTAATTTAACACATACACCCAACTTGGAGTAGCACTTTCTAGCTACATAGTTCTGTTCTATAAG CTAGCTGAAGCACTACCAACAACAACACAAGGAGAGTTCAATAAAATCCCAAGACCAAGAGACCAAAACAACAAAAACAGCAATACAAAATGATGCAATT CAAGATGACAGAGATGTGGACAACAATGGGCTCAACCTTAGCCAGTTTCATGTTCGTGTGGGCGATCATACGCCAATACTGTCCATACGAGGTAACGCGA TTCTTCGAGAAGTACACACACAATATCATGGGATACTTCTACCCTTATATTAGAATTTCCTTCCATGAATTCTTGGGAGACAGGTTGAAGAGAAGTGATG CATATGCTGCTGTTGAGGCATACCTCAGTGCCAACACATCGAAGAGCGCTAAGAGGCTCAAAGCTGAGATGGGAAAAGATAGCACCAACTTGGTTTTAAC CATGGATGAGTATGAGAGAGTAACTGATGAGTACAAGGGTGTGAAAGTTTGGTGGGTGTGTAGCAAGGTTATGTCACCAACAAGGTCCATGTCTTATTAT CAAGAACAAGAGAAGAGGTTCTATAAGCTGAGTTTTCATAAGAGGTATAGAGACATAATCAGTGGTTCATATTTGGAGCATGTGATGAGGGAAGGGAAGG AAATTCGTTTGAGGAACAGGCAAAGGAAGCTTTACACCAATAGTCCTGGTTATAAGTGGCCAAGTTATAAGCAAACTATGTGGAGTCATATTGTGTTTGA GCACCCTGCAACGTTCGAAACAATGGCAATAGAACCAGAGAAGAAGAGAGAGATCATTGAGGATTTGGTTACTTTCAGCAAGAGTAAGGAGTTTTATGCA AGGATCGGGAAGGCGTGGAAGAGGGGCTATCTTCTTCATGGTCCTCCTGGAACAGGTAAGTCCACTATGATTGCAGCAATGGCTAATTTATTGGCATATG ATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACTGAGCTGAGGAAGCTTTTGATTGAGACAACTAGTAAGTCTATAATTGTTATCGAAGATAT CGATTGTTCACTCGATCTTACAGGCCAGAGGAAGAAAAGGGGAGATAAGTTTTCAGATGATGAGAGTGATAAGTTGAATTCAGAAGTCGGTTTACGGAAA GAAGTGAAGGAAGAAGGAAGCAGTGGCAGCAAAGTGACACTTTCAGGGCTATTGAATTTCATAGATGGGATATGGTCTGCATGTGGAGGGGAGAGGTTGA TTGTTTTCACAACTAACTATGTGGAGAAGCTTGACCCAGCACTTATCAGAAGGGGTAGAATGGACAAACATGTTGAGCTTTCTTATTGTACTTTTGAAGG GTTTAAAGTGCTTGCTAATAATTACTTGAAGATTGAGACTCATCCAATGTTTGACACAATTAAGAGGCTGATAAGTGAGGTTAAGATTACACCAGCTGAT GTTGCTGAAAACCTTATGCCAAAGTCTCCTATGGATGATGCAGATAAGTGTCTTTCTAACTTGATTGAAGCACTTGAGGCTACAAAAGATGAGGAGCTGT TGAGCCTGAAACAGAGTAGTCCCATCAAGCAAGATGAGAAACTCAAGCATGGCAGTCACATCAAGGAAAATGGTAAGTTACATGAGGACAATGAAAATGA CCAATCATTGAACCAAAGCAGGTGATAGCGCGTTATCGATTTTATCATGTAAAAGAAATTCTGTCCTAAGGGCAAAACCTTAGGCACATTTCTTGTTATA TAGTAGTATCATATATTATGTATCTATCTTTCTCAGCTCCAAGTGGAACAAAAGTAGAGATTAATATACTTTAGTGCTTTGATTTGGTTCAGATTGTGAC AGTATCTGAAATATTTGTCATCCAATGTTTCTCTATATGTTTTCAACTTCTTATTAATTTTTTCCTAAAATGTAACTTAAACATTGAAACAAAAA
• Tissue: pods
• Gene name: LI_gene_135525;
• Additional information: details;

Expression of Ll_transcript_524001

FPKM

• PAB: 1.3
• PNAB: 10.4
• PS1: 16
• PS2: 5.8
• PS3: 8.8
• PW1: 0.7
• PW2: 2.9
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_524001

• Blastp: AAA-ATPase ASD, mitochondrial from Arabidopsis with 58.35% of identity
• Blastx: AAA-ATPase ASD, mitochondrial from Arabidopsis with 58.3% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT5G40010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464299.1)
• Pfam: Domain associated at C-terminal with AAA (PF14363.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;