| Id Trinity | TRINITY_DN43120_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_495484 |
| Sequence | ATTAATTTTAGGTTTTTGACAACACTCTCCAACTTCCATGGATTTTTACCCTTTTCATCACTCTCATTCACAATCTCACAATGGTGACGGAATTGTTCTT CAAAACCACGAATTTAATCCACTACCCCATCATTTTCATGCTAATCATGATGACTACACTCATAACAATCGTCACCATTCGCTTTCAGGGAAGCTTTTTG TTGGAGGCATTTCTTGGGAAACTTCTCAAGAAACATTTTTTAAATACTTCAACAAATTTGGAGAAGTAGTAGATTCAGTGATAATGATGAATAAGCAATC TGGAAGGCCAAGAGGGTTTGGTTTTGTAACATTTACCGATTCAGCTGTTGCAGATAAAGTTTTGGCGCAGGAGCATACCATAGATGGCAGAGTGGTTGAA GTCAAGAGGACAGTCCCTAGGGGGGACATGGAAACTACTGCAGTCTTTAGAACGAAGAAAATATTTGTCGGTGGAATACCCCAGTTTTTAACAGATGGTA TAGAAAACTAGCCATCATTTCTTTCTTCAAGTTATAGTTGAACTTGTATTGCTGTCTTCTGGGTTCTCACTATAATGGATTAATTTGTAGATGAATTGAA GGAATACTTTTCACCTTATGGTAATATTGTTGAGCACCAAATCATGCTAGATTATCAGACTGGGCGATCTAGAGGTTTTGGATTTGTCACTTTTGACAGT GAAGATTCAGTGGAAAAGGTTGTTTCAGCGGGAATAATACATGAACTTGGAGGCAAGCAGGTTGAAATTAAGAGAGCCGAGCCCAAACGATCGGGAGTTG ATTACAGTAGCACCTCACGAAAGTCATATGGTGGTTTCGGCAATGAAATGAATGGATTTGGTGGTCATAATCCTAGAGGTCAAAATATTGGAAAAAGAGG TGGACCATATACAGATTCTGGCATGAATGGGGCATATAGCCATTTTGATGGTAGCTACAGTGGAAAGTCCGCAACTGCGCATGGTGGCTATTGTGGATAT GGTTATGGTTTTGGGTATGGCGGGCCAATGTATTGCTTTGGTGGTTATGGAGTCAATTCTTATGTTAATCCTGGTGGCTATGGTGCCATTGCTACATATG GAGATGGCAATTCATATGGAAGAGTTGGTAGTTTTAATGGCACTTGTGGCTATGACAATGGCAAAGTGGCTGAGAAGGATGAGAATCCTGCAAATGGAAG ATACCATCCTTATTGGAAGTGATTGATGTTCCAAGATCAGTAAACCATACCCTGCTTCCAAAAGGCATGATTGCTGCAGCATTACCAATCCTCAGGTTTG CGTGTATCATTCAGATCTGGAATTGGAAAACAGAAAAATATATACATTGCATCTAATTTTTTTGCGAAACTTGTGGTTTCTTGAATTTCTTAGATAACGA CAAAGCGGGTTCTAAAACTTATGCTGCCGTGTTGGCTACCGAATCAAACATATACTTAAGTTTCTAACATCGACCATATTGAATGTTAGGTTTATTATAA TACTCTCGTGTTACAAGGGTACACTTGAGCTAAGATGAGCGGGTCATTATTAATTCAAACCAGGTTTTAAGGAAATTTGTTTAATATGAGCTAACTCAGA CGTCAGTTCACTTATCTACTGTATATATTTGAATACTTTTAGAATTTTTTTAGCGTTTGAAATATTTGCATGTATTTATATCTCAAACTTAGTTGTTGTT TTGTCATTATATTCTTTCCTACATATGTTTAGATATGTAACAGATCACCAGCCCTGTGTATTAGTTCCAATTCGAGTCTGGCACACACAACACACTGCAT AAATAAATATAATGGAGATAATGGATTTGTTCAAGCTAGTTAGCAAGTTAACTAGTTTAGTACTTTGCAAACTCAGTGTGGGATTGAACTACTGAGATAT TTAGACAAATTGCGGAGTAATGTGCGAGTTTTAACTAGTGGCAGTTGATTTCTGTAAGGTAGTTTTTTATTGTTTGAGGAAAAGATAGGATAGAAATTTT CATGCAATCTTGTTGGAGTCTAAGAGTAACCAAACATGTCAATTTTTAGCTAAGATACTACTTATGTATTTTTAAGTTCTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_135571; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_495484
| Blastp | Heterogeneous nuclear ribonucleoprotein 27C from Sophophora with 45.83% of identity |
|---|---|
| Blastx | Heterogeneous nuclear ribonucleoprotein 1 from Arabidopsis with 42.66% of identity |
| Eggnog | Rna-binding protein(ENOG410YA8Z) |
| Kegg | Link to kegg annotations (Dmel_CG10377) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019436500.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |