Id Trinity | TRINITY_DN43131_c0_g1_i1 |
---|---|
Name Transcript | Ll_transcript_495227 |
Sequence | CTTCTCCACTTCACTCATTTACTCTCTCAATATTTATTACACTTTTACCAATGGCAGCATATTCCGCTGCCGAAGATGTAAAGTTTCAGAAAAAAGACGA CGTCGTTTACTTTAACGGCCAACCCGTCCACATGGCCATCCCGTTAACGGTGATCCGCTCCGTCACAAGTAATGGCGGTGCTCGCGTTGTTGCGCCGCCG CTGGTTGAAGTTAAGGAAGAGCCAAAGGAAGTAACCGATTCCGAAGTGGTAATAGAGACTCAGATGAAAAAGCCAAAAATAGAACACGAGTGTTTTGAAT TTAAAGACACTAGATCGCCGTCGTTTGATCGTTTTCTCGAGTTGAGTAACACGAAAGTTATGTCACACGACGAGTCCTTAAAATCAATTGTTCATGTGAA AGAAGAACGAAGCGAGTGCATTGAACCGGAAGAGAAGAAACCGGTTTTTTTCGAAGTGCGTGAGAAAGAAACGCCGTCGTTTTCAGAAGATTCTCTGAAA TCAACTGCAGCACAAGGAGTTGATTCTGATGCTGTTGAATCTAAGAGCAAGAGGTGTGGTGATGAAGAAGTTCAGATTCTTAAGGTGAATCCTTTTGCAG GTTTGAATCTGAAGAGGCATTCGAAGGCGAAGGTGGCTGAGGTGAAGAAGGAGAAGGTAGAAGTGAAGATTCTTAATTTGGAGGATGGCGAGTTTCCGAT CGAGCCAGGGTGGTTATTGATCGGAAGGAAAGTGGAACTCGCGCTCGCGACTGCGAAAGGAGTGAGGAAATTGGTTGATAATGAGATTGTTCACTTCAAT TTCACTCTTCCATACAAGTCCAAATCACAGTGGATTGTTCGCATTTCAACCAAGCGTTCTGGAGAGGTTGGAAGGCTTCCTATGGAATGGGCAAACACGG TTGTTCCACTTGTGCAGTCTGGAAAGGTTAAGGTTCAAGCGAGATGCATATCCGCCCCTTACAGCCTGCAAATGATGCAAGAAATCATGTTGCTAGTAAG TTTTTACACTCACCAATCTATACTCACACAAAGTGTTGATACCTCTTGGAATCTAGATGCTACAAACATTAACCCTACTATTTATCCACTGCTTACACTG TTCAAAATGCTAGAGATTAAGCCGTCTCAGAAGGCTGATTTCGCTCCTGAGGATATTGATTCTAGGAAGCGCTTGCTTAATCCAAAGCTTGATCCTGATG AGGTTGCAGCATTACCTTTAATTAAGAGAAGAAAGGGTGGTGACCAGCTATCAGAACAAAAAGATGATGATGAACAAGCTCTTTCAGAGTCTGCTTTGAA TAAGCTTGTTGGAGCTGCAGAAATCTATGAGCTGGAGGAGAAGGATGGCCCAAACACACTGACTTGTTGTCTGAAGCCTTACCAGAAACAAGCTCTCTAT TGGATGTCAGAAATTGAGAAGGGGATGAATGTTGAGAGGGATGCAGAAAATCTTCATCCTTGCTGGTCAGCCTACAATATATGTGATGGAAGGACAATTT ATGTGAACATCTTCACAGGGGAAGCTACAACAAGATTTCCAAGAGCAACTCAGATGGCAAGAGGAGGAATTCTGGCAGATGCAATGGGACTTGGAAAAAC TGTTATGACAATTGCTCTGATTCTTAGTAACCCAAGCAAGGGGAATGATGCAGAGAATGCAACTGATAACCTTGCTACAAATAAGAGGAATATGAACCCC ACATACAGAGTGAATGGTGGCACTCTTATTGTTTGTCCCATGGCGTTGCTAGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAGGCTGGTAGTATAA CAATATTTGTTCACTATGGTGGGGGTAGAACCAATAATCCCCAGCTGCTCTCAGAGCATGATGTTGTCTTAACTACATACGGAGTCCTACAATCTGCATT TAAAAGTGATGGAGTGAATAGCATTTACCACAGGGTCAATTGGTACAGGGTGGTGTTAGATGAAGCTCATCATATCAAAGGCCATAAATTACAGATTTCC CAGGCTGCTTTTGCTTTGTTGTCACACTGCCGCTGGTGTCTAACTGGAACCCCTATTCAGAATAGTTTAGAAGACTTATTCAGCCTCTTGTGCTTCTTGC GTGTTGAGCCTTGGTGCAACTGGGCATGGTGGCATAAGTTGATTCAAAGGCCCCATGAGAATAATGATCCAAGGGCCCTGAAATTGGTCAAGGGCATTTT GAGGACTATAATGTTAAGAAGAACTAAGGAAACAAAGGACAAAGAAGGAAGGCCCATACTAGTCCTGCCACCAACTAATATTCAATTAATCGAGTGTGAA CAGTCAGAATCTGAACGTGAATTCTATGATGCCCTCTTTATGAGATCTAAAGTAAGTTGTATCACCTAATTTGTAATTAGTTTTGAGCAAGTATTTCAAA TTTCTATATTTTTGTAAATGAA BLAST |
Tissue | pods |
Gene name | LI_gene_135588; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_495227
Blastp | DNA repair protein RAD5B from Arabidopsis with 61.01% of identity |
---|---|
Blastx | DNA repair protein RAD5B from Arabidopsis with 62.13% of identity |
Eggnog | Transcription termination factor, RNA polymerase II(ENOG410XPDU) |
Kegg | Link to kegg annotations (AT5G43530) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449940.1) |
Pfam | HIRAN domain (PF08797.10) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |