Ll_transcript_452301

• Id Trinity: TRINITY_DN43203_c0_g1_i1
• Name Transcript: Ll_transcript_452301
• Sequence: CGCGCACTCGTATATGAGTAAAAATCCCTACCACTCTCAGTTACTCATTATTCTCTCACTCTCAGCGAATCCCATACAATCGATACACTCAGAATTCAGA AATGACGGATGAAGAGTCTCCAACCACCGCAACCGCCACCGGGAGGCGAAGGGCCAGAGGACCAGAGGCCTCCGCCCGAAGCGAAGCCCTAGAACGGCTC AAAGCCCGTCTCCGCGGCGGCCGCAGATCTGACGACGGCGGTCCCCAAATCAGGTTAGAAAACCCTATTTACGACACTGTACCTGAGGACGAGTATAACG CCCTCGTCGCCAAGCGCCGTGAACAAGCGCAATCGTTCATCGTCGATGATGACGGCCTTGGTTACGGTGACGAAGGTGAAGAAGAGGATTGGTCAAAAGC TGGATTCACACTCTCAGATGAATCAGACGGTGAATTCGAGAGACCGAAGCGGAAGAAAGTTGAAAAGAAAGATCCTCAAACGAAACGTGCTTCTGCTTCT TCTGCCTCGCTTTCAGCTGCTGCATCCATTATGGGCGCGAATAGGTTATCGTCGATGTTCACTTCATCAGTTTTCAAGAAGAGAGATGATAAGTCATGTG ACAGCATCGTTGATGATGTGATCGCGGAGTTTGCGCCAGATGAGAATGATAGACAAAGGCGTAGAAGAGTGCAATTGAATTCGGTTTCCACTGAATCTGG TGCCAGTGAAGCAATAAGGATTAACAGTGCTTTTAGTGAGAAACCGTTGATTGGCGACTCTACTGATTCAATTAGAGGTCATACTGTTGCAAATCGTGAC GCCGAATCAGTTAGGGTTGTTAAGAATACTAATAGTTCTGACTTAGGTTTAGAGAAAAATTATGACACTATTAAAGAAAATGTGTCATGTGTTGAGGATG GAAAAGATTTTAGTTCTGAAAATGGTGAATCATCAATTGAGCAAGTGCAACCTAATGGAAATTTAGTCGAGGAGAAGGTGACTAAGGAAATTGAAGTAGA AAGGAAACCGGCTACAAAAAATGAGGTGTTTACACTGAATGCGAAGGTTAGTAAGGAAGCTGACCAGGGATTGAGTGCAACTGCAGATTGGAAAGCATTG AAAAGTGGTGGAGTGGAGAACATTGTTGCTGATTCGAAAGTGGCGAGGGAAGCTTCGAATGCCGAACAAAACTCAGAGTTTAATCTCGATAAAGATGGAT TACTGCCTTTCTATTTGCTAGATGCATACGAGGAGTTTAAAGGAGTCAATGCAGGCACAGTTTATTTGTTTGGGAAGGTCAAAGCCGGGAACATGTATCA GAGTTGCTGTATTATTGCGAAGAATATTCATAGATGTGTCTATGCAATTCCAACTCATCCTTTACATTACACTGATGAGATAATAAAGCTTGAGAAAGAT GTACAGGAATCTCAAATTTCTTCAGCCGATTTCAATAAAAAGTTACAAGATGCAGTATCTGGTTTAAAGAACGAGATAACAAAACATCTCTTGGATCTGA ATGTATCAACCTTTACCATGGCACCTGTGAAGAGAAAGTATGCATTTGAGCATTCTGAAATTCCTGCTGGTGAAAACTATGTGGTGAAAATCAATTATCC ATTCAAGGATCCAGAACTTCCAGTAAATCTCAGAGGAGAAAGTTTCTGTGCCCTTTTAGGAACTCAATGCAGTGCACTGGAACTTCTTTTGATTAAAAGG AAGATAAAGGGGCCTTCATGGCTACACATTTCGAACTTTTCTACCCCCACAGCTTCTCAAAGGGTTAGCTGGTGCAAGTCTGAAGTGATTGTAGACTCTC CTAAAGACATAAAGATCCCAGCTTCCTCAAAAACCCCTCCTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACA GGACATAAATGAGATTGTATCTGCATCCATTGTCAGCTGCAACAGGGTTAAGATTGATACTCCAATGTTGGCTTCAGAGTGGAAGAGAGCTGAAATGTTG ACCCATTTTACCGTGGTCCGAAAACTTGATGGGACTATATTTCCACTGGGGTTCAGTAAGGAGGTCACAGACAGGAACACAAAAGCTAGGTCAAATGTTC TTTTTGTTGAAAGCAGTGAAAGAGCTTTGTTAAACCGTCTGATGATAGAGCTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATT TGACCTCGATGTTCTTCTCCACAGATCCCAGGCTTTGAAAGTACCACCCAGGTTCTGGTCTAAACTAGGTCGCCTCAATCGTTCTGTCATGCCTAAGCTT GACAGAAAATACAAAGGTTCTGGAGCTAGTCATGGTATCATGTCCTGCATTGCTGGCCGGCTTCTTTGTGATACATATTTGTCATCCCGTGAGCTATTAA AGGAGGTTAGCTATTCTTTAACTCAACTAGCAAAAACACAACTGAACATGGTCCGGAGGGAAGTTGCTCCACACGACATTCCAAAGAAGTTCCAATCAGC AGAATCCTTAATGGAGCTTATTGAATATGGTGAGACAGATGCTGTGTTGTCTATGGAACTCATGTTTCATTTATGTGTTCTTCCTCTCACACGTCATCTG ACTAATATAAGTGGAAACATGTGGGGGAAAACACTTCAGGGTGCTCGGGCACAGAGAGTGGAATATCTTTTGTTGCATGCTTTCCATGCAAAAAAATATA TTGTGCCAGACAAGGTCTCGGTCTATGCAAAAGAAACAAAATTGCCAAAACGCAGAGCACCTAATGGTGTTGATGATAGTAACTTTGATGAAGCAGATAT TGATGATGCGAACTATGATAATGTTGCTGGCAACGGTGATAATAAGAAAAGCAAGAAGACTTCTTCCTATGCCGGGGGATTGGTTTTAGAGCCAAAGAAG GGTCTATATGACAAATATATATTACTTCTGGACTTTAATAGTCTTTATCCTTCTATCATCCAGGAGTATAACATCTGCTTCACAACTGTTGAAAGATCTT CAGATGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAGAAATCTGGTTGAAAGGAGGAGAATGGTAAAGTCATG GATGAAGAAAGAATCAGGCCTTAAACTCCAGCAATTGGACATTCAGCAGCAAGCACTGAAACTCACTGCAAACAGTATGTATGGATGCCTGGGCTTTTCC AATTCAAGATTTTATGCAAAGCCACTAGCCGAGCTTATTACCCTACAAGGAAGGGAAATACTGCAGAGCACTGTTGATCTTGTTCAGAATAACTTGAATT TAGAGGTTATCTATGGTGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAATCAAAAGCAATGGCTGGAAAAGTTATTCAAGAAGT CAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTACTACTTAAGAAAAAGAAATATGCAGCCGTAAAGGTGCAGTTC AAAAATGGCACCCCATATGAGGTTATTGAGCGTAAAGGTCTTGATATTGTTCGTCGCGACTGGAGCTTATTAGCTAAAGAAGTAGGAGATTTTTGCTTGA GTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATACACAACCATCTCATGAAGGTGCAAGAAGAAATGAGGAGTGGTGATGTACCACT GGAAAAATATGTCATCACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCTAAAAATCAACCACATGTTCTTGTGGCACAAAGATTGAAGCAA CAGGGTTACTCCTCTGGCTGCTCTGTTAACGATACCATCCCTTACATAATTTGCAATGAGCAGGGAGGTAGTTCAGGCAGTGCAACGGGCATTGCTCAGC GTGCCAGACATCCTGATGAACTTAAGCAAGAACAAGAGAAATGGATGATTGACATTGAGTACTACTTGTCACAACAGATTCATCCTGTTGTATCACGTCT TTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGAT GATCCTACAAGCTCACTCTTGTTTTCTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCTTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACTTTTG ACTGCCCACCTGTCTTCAAATCCATTTGTTTGTTAGGAAGTGGAAAGCCAACCAACCCAGGCATGGAGGATTCCAACTACAATTTCTGGCATAAGCTGCA GTGTTCTAAATGCCCAGAAGAGGGCGGTGCTGGCAGAATTTCACCTGCAATGTTAGCTAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTCACTGTAC TATAAAGGTTTACTAATGTGTGATGATGAAACCTGTAAGCATACAACCCGAACTATCAACCTTCGGTCGGTTGGTGATTCCGAAAGAGGAACTGTTTGTC CAAATTATCCTCGCTGCAATGGGCATCTCCATAGAAAGTACACTGAAGCAGACTTGTACAAACAACTATCATATTTTTACCATGTGCTGGACACTGTTTC TGGTATAGAAAAGATGGAGACTAAATCTAGGATACCGGTCGAGAAAGAGTTGATGAAACTTAGGCCGGTGGTTGATATGGCAGCATCAACGATACAGGGG ATCAGGGACCGCTGTGCCTATGGATGGGTGAAGCTACACGACCTAGTCATTACAGCAGATTAATTACAAATTTAAATGCCAAATCAAGTAAGAATATAGT ACAGGAAAAGTGATGCCCAAATTTGAATCTACACCAGCAAGGAGTTATTGACAGATTCTTGTTGTCCTTGTATCTTGATTTTATCAAATGTTTATGATAG CATCCTTGCATTATAAGCAAACTGATTGTGTACGTCATGTAAGCAACATAAGGATGATTAACATCTTTATGCAATTCCCCCCACTGTTTATTATTTAAGC TGCAGTGGTTTATTATTCGGTATTGCCATTGCCCATAGAGACTAATATCAAATTTTCCTTTCTTGGAAAAAATATCAAATGTTTTTTTAAATAATTG
• Tissue: pods
• Gene name: LI_gene_135688;
• Additional information: details;

Expression of Ll_transcript_452301

FPKM

• PAB: 0.1
• PNAB: 12.7
• PS1: 8.7
• PS2: 3.2
• PS3: 5.3
• PW1: 3.5
• PW2: 1.8
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_452301

• Blastp: DNA polymerase alpha catalytic subunit from Oryza sativa with 61.82% of identity
• Blastx: DNA polymerase alpha catalytic subunit from Oryza sativa with 61.63% of identity
• Eggnog: DNA polymerase(COG0417)
• Kegg: Link to kegg annotations (4325052)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421313.1)
• Pfam: DNA polymerase alpha subunit p180 N terminal (PF12254.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;