Ll_transcript_527449

• Id Trinity: TRINITY_DN43310_c0_g1_i3
• Name Transcript: Ll_transcript_527449
• Sequence: GGCTAGGTAAGTAGGTATTATTCATTTGTTTCATAATCAATAAAAAATATCTATCTCATCACTATCCCCTACAAAAATACCATTTCCATAAAGATAAGGT CTTTAACAATTTCTATCTCCTCTTCAGAACCAAACCATCTCCAACAATGGCTGCTCCTCTGTCCACCACAATATCTATCGACCCCAGCACCAGAACACGC TTTACCATTGTCACCCCTCTCACCTTCACACACAGAAATTTTTCCATACACTGCACCGCTTCTGAATCCATTCCACAAACTCCTCCTACATCAACCACTT CAAACACCAAGAATAAGAAGAACAACAACAAAAATTCTTCTCTTTTCGACCAACTCTCACCCCTTGCAAACACCACCTTGTCTAACACAACATCAAAAGA TCAATCATATGTCTTATCCAAACCAAAATCCACATGGGTCAACCCCACCAAACAAAAACGTTCTGTCCTTTCACAGCAGAGGCACAAACGTGTTCCTTAC TCCTATAGTCCACAGCTCAGAGATTTCAAACTCTTTGCACAAAAGCTCAATGATTCTGGTGACTCTGAAGCTGAGTTTTTGGCTTGTCTTGGAGAAATCC CACATGAGCTTACAAGAGAAAATGCACTCTTGATACTCAATAGTTTGAAGACATGGCAAAAAACACTACTTTTTTTCAATTGGATTAGGACCCAGAATTC GCTTCCTATGGAAACCATATTCTACAATGTCACGATGAAGGCTTTGAGGTTTGGGAGACAGTTTGGGAAGATTGAAGAACTTGCACACCAGATGATTGAT GAAGGGACTCAACCAGATAACATTACTTACTCAACAATCATAACTTGTGCTAAGAAGTGTAATCTTTTTGACAAGGCTGTGCAGTGGTTTGAGAGGATGT ACAAGACTGGTTTAATGCCAGATGAGGTCACTTACTCAGCTATCTTGGATGTTTATGCTAAGCTAGGTAAAGTTGAAGAGGTCATAAATTTGTATGAGAA AGCTAGAGCAACTGGGTGGAAACCTGACAATATCACATTCTCTGTGTTGGGGAAGATGTTTGGGGAGGCCGGGGACTATGATGGTATTAGGTATGTATTG CAAGAGATGAAGTCTATTGGGGTGCAGGCTAATTTAGTTGTGTATAATACCTTGTTGGAGGCAATGGGGAAAGCTGGGAAGCCAGGGTTTGCAAGGAGTT TGTTTGAAGAAATGATTGATTTGGGGATAAGCCCGGATGAGAAGACTTTAACGGCACTTATTAAGATATATGGTAAGGCCCGGTGGTCTCGCGATGCACT AGAATTGTGGGACCGAATGAAGGAAAATCGCTGGCCTATGGATTTTTTTCTGTATAATACATTGTTGAATATGTGCGCAGATGTTGGGTTGGTGGAGGAG GCTGAAACTTTGTTCAGGGATATGAAACAGTCTGAGCATCGCAAGCCAGACAGCTGGAGTTACACAGCAATGCTTAACATATATGGCAGTGAAGGAAATG TAGACAAGGCGATGAAATTGTTTGAAGAGATGTCTAAGTCTGGGGTTGAACTCAACATCATGGGGTGTACTTGTTTGATTCAATGCTTGGGAAAAGCTAT GGAGTTTGACGGCGTGGTAAGAGTTTTTAACGTTGCAGTTGAGAGAGGAGTTAAGCTAGATGATAGGCTATGTGGTTGCTTGCTATCTGTTGTGTCTTTG TCTCATGGCAGCAAGCATGAGGAAAACATTCTTGCTTGTTTACAGCAGGCTAACCCAAAATTGGTTGCTTTTATTCAACTGATTGTGGATGAGGAAACTA GTTTTGAGACCATCAAAGAAGAGTTCAAGAATATCATGAGCAGTGCTGCAGTTGAAGTTAGAAGACCCTTCTGTAATTGCTTAATTGACATATGTAGAAA CAAAGAACTCCAAGAGAGAGCCCACGAGCTTCTGTACTTGGGAACCTTGTATGGGTTGTACCCAAGTTTACACAACAAAACTGCCAATGAATGGCGTTTA GATGTTCGATCATTGTCAGTTGGTGCAGCTGAAACTGCATTAGAAGAGTGGATGTGGACACTCACCAAAATTGTTCGGCGGGAGGGGACATTGCCAGAGT TATTCCTAGCCCAAACTGGTAGCGGTACTCATAAGTTTGCCCAAGGACTGAACATTTCTTTTGCCTCTTATTTGAGGAAACTAGATGCTCCATTTAGGCA GAGTGAGGAAAAAGTTGGTAGTTTTATTGCAACTAGAAAGGATTTAGTCTCTTGGGTGCAATCGAAGTTTCCATCAGGTGCTATTGCAACATAGATGGTG GAAAAAGTTCTAGCGGCATTCACCTTCATCCATATGGCTAATACATGAAGTGATATATTCAACTATTTCGAGGTTGAAGCTAGAGATGGCATGTAATCTT CCTCTCATTTTTTAGAATGTCAACACATTCTAAAATTTAGTATTCCTCGTTTCTTCTTTTTTTGTCTAGCACCTTACAAGTTTGGATAGAAGACTGAGGG AGTGCTGCTGTGAGTTGATCATTTTATTAAATTCAATGAAGGGTGGGGGCATAAGCACTATAATATGTCTATTTACAGCTCTCCCTTTTTAAATTTTTAT TGTACTTTTGAATTTTCACTTAGTTGAGTTACTTTTTAGTTATCATTTTCGCTGTTAAATTTGCAAGATTCAATGTCAAGAGTTTAATCCATATCCAGAT TTGAGGTGTTATATCATGGGAAACAGATATAGTATGATATCAATCATGAATAAACATTGATTGTTTTGTATGCTATCCTTGCTAGAAACTGAGGAGTCAT TTAAAAAAACATTTTAGAGAAGAGTATTTCAGGAAGCTATACTTTGGTTGTTGTTTCGCGTGTTGGACATCAATGGCTTGTAGTGCTTTATCACACATAG AGGGTATGCTTTACTATGGTTTTTTTTCCATCAACACCGGCAATTTATTTATCAAAGTTCATCTGAGTCATAATCATGCAACCTGGAATTCTCTGCTGTC TACTTTGGCTGTGTCAACTTTAAATCTTGTCTTTCTATTTTCAATAAGTGATTGTATTATTGTATTCTTATTTTGTATTAATAGACAAATCAGAGTTTTC AAATGGTTGTAAAATGCATAATGACAATGTTCACTAAGACTAAATTTCAGGTATTCTAGGAAAGATGGATTGTAGATCTCAACTACTTCAGTGCATGGAG TGCAGCTAGCTAAGGCAATTCTGCAAAATCTGAAGGAAGATAAATATAAATGAGTGCACTTGATGAATAACTAGAAAGGGTCATGTGGTGGAGTCATCTT ATGTGTTATTTGGGCTTGTCATTTTCCCTTCTATGATTTGAAACTTATTAGACAGTAAGAAAATGGCAAAGCAGAATATTAATGTCAAAACTGGTTTTCT TTTCTTTTTATTTGGTTTATACCAAGGTTCCCTTGTTGACAGAGCAAAATTAACCTCTTTCATATAGAAATCACCCATTAGTTTTACCTCTACCATCAAA GTTTTATCCATGCTGGTATTCATTTGAAATGCCTAAAATATTAGCATAATGAGTATGTTATTTGAGAA
• Tissue: pods
• Gene name: LI_gene_135844;
• Additional information: details;

Expression of Ll_transcript_527449

FPKM

• PAB: 1
• PNAB: 2
• PS1: 1.3
• PS2: 1.8
• PS3: 1.8
• PW1: 3.5
• PW2: 3.5
• PW3: 2.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_527449

• Blastp: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic from Arabidopsis with 63.52% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic from Arabidopsis with 68.68% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G46580)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445981.1)
• Pfam: Pentacotripeptide-repeat region of PRORP (PF17177.3)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;