| Id Trinity | TRINITY_DN43503_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_395668 |
| Sequence | ATGGAGCGATGGATCTGCTGTACTGATCATATATGCATTGCAATAAAGTTTTGTTGTGTATCATAACAAATTGATAATCTATCTTGCTGTATTTTTGCAG AGAATCTAGTCAGATGTCGTGTCTCATTTTTGTTGAAAGAAAACTTACAGCTAAGTTAATGGAAAAATTTGTAAAGAAAGTATCCCATATATCTCATTTC ACAGTTTCCTATATAACCGGAGGCAATACTGCAGTTGATGCGCTGTCTCCTAAGAAGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAGGGGTATTTG GTCATTGCATCATATGCTATGAAACAAGTCCTGATGAAAATCTCTTGATAGGTTATTAATCCTTTTTATGTAGGTCAATCTATTAATTACTACTGATGTA GCTGAGGAAGGAATTGATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTACCCAAGACAGTTCGTAGTTATGTCCAATCTCGGGGAAGATGTAGGC AGCCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACTTTTTGACATCATCAGGAGTGAGCGCTCCATGACTAATGC AGCTACTAATAAAGACCAGAATGCTTCTAATTTAAGGGTGTTTACTGTAGGGAAAACAAATGCATACCATGTGAATTCTACTGGAGCATCAGTCACTTTA GATTCTAGTGTTGGACTTATAAATCGATACTGTGAAAAGCTACCACATGATAAGTACTCCCGTGTGAAGCCCACTTTTGAGTTTCAGCCTATGGGAGGGG GTTACGCATGTAAGTTAACATTGCCGCCTAATGCAGCTTTCCAAATAATAGTTGGTCCCTCAGGAAAAGATGTTCATTTGGCAAGGCATCTTGTATGTTT AGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATCATCTTGTCCCTCTCATTAAAGAAGAGCCTTTAGAAACTGATTGTATTGTGAAAAAC AAAGAATCAAGTTCAGGTCCAGGAAGTGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTGCGTTATGTGGTACATGGGGAGACAAAC TTGATGACACGAAATTTCATGCCTATAAGTTTGATTTCACATGTAATATTGTCAGTGAAATTTACTCCGGGTTTGTTCTTCTGGTTGAGTCAAAGCTTGA TGATGATGTGGGAAATATGGAGGTAGATCTTTATTTAATCTCAAAGATGGTGAAGGCTTCTGTCTATTCACGTGGGCAAGTTGACCTGGATGCTGAACAG ATGATGAATGCTAAATGCTTCCAAGAGTTTTTTTTCAATGGTTTGTTTGGGAGGTTGGTTCTTCGGTCTAAATCAGCAGCAAGGGGAGGAAGGGAGTTTT TACTTCAAAAAGACACAAATACGTTATGGAACCCAACATACATGTTTTTGCTTCTACCACTTGAGAAACTGAATGATTCATGTATGGGATCATTGACAAT AAATTGGTCTGGAATCAAATCTTGTGCTTCTGCTATTGGGTTTTTAAGGAAGAAGTTTTTGTTGGTTGCTGGAGATTGTTGCAATGATAGTGATGACACA AAAATCACGTCACCTTGTGATACCAGTCCAATGGAGGTGGAAAGTCAAGATAAAAATAACATTTACTTTGCTAATTGTATGCTTGATGTTAATAATCTAA AAGACGTGGTAGTTTTGGCCATTCATACTGGCAGAATCTATTGTATTGTTGAATTAGATATCAACCTATCCGCTGAAAGTCCCTTCGATGGCAACGATGA AAAGTCTGGGGGTGAACAAATAACATTCGCAGATTACTACAAAAAAAGGTATGGCATTACGCTGAGACATCCAGGGCAACATTTGTTACGTTTGAAGCAA AGTCATAATGCACACAATCTTCTTTTGAACTTCCACGAGGAAGATGGTCGGGACAAGGCATCACAAACTGGGCAGGCACAATCAAAGATGCCTGCCCATG TTTACATTCCACCTGAGCTTCTCTATGTTCTTGATGTTAAAAGAGACGTTTTGAGGTCAATGTACTTGCTACCATCACTGATGCATCATCTTCAATCGTT CATGTTATCCAGTCAGCTTAGAGAAGAGATAGGTGGCCAAACTAACAATTTCAACATTCCTAGCGCTCTGATTCTAGAAGCACTTACAACTTTAAGATGT GCTGAAAAATGTTCAATGGAACGTCTTGAGTTACTTGGAGATTCTGTTCTAAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATG AAGGACAATTATCTGGCATGCGATCACTGGCTGTCTGTAATTCAACCCTACATAAACGGGCAACAGATCACAAACTGCAGGAGTATATCCGAGACTCAGC ATTTGAGCCACGCCGTTGGGTTGCTCCAGGACAGATATCTATACACCCCGTTTGTTGTGAATGTGGGTTGGAAACACAAGAAGTGCCTTTAGATGGAAAG TTCCATACTGAAGATCCGAAAGTTGTGGTTGGGAAGTTATGTGACAAGGGTCACCGCTGGATGTGTTCAAAGACCATTGCTGATTGTGCTGAAGCTCTGA TAGGAGCATACTATGTGGGTGGTGGATTAATTGCTGCACTTCACGTGATGAAGTGGCTTGGGATTGATGCTGAACTTGAACCTTCTTTGGTTGATGAAGC CATAACTGCTGCGTCTCTCCATGCATATGTGCCAAAAGTTGAAGAGATTGGAAGCCTTGAAATGAAAATTGGCTATGAATTTTCCATCAAGGGACTCTTA CTGGAGGCAATGACACATGTATCCGGGAAAGAAGTTGGGATTAGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTACTGGACCTGCTTATCA CACGCCATCTTTATCAGAGCCACACAGATATTGATCCAGGAGAATTGACTGACTTGCGTTCAGCTTCTGTCAGTAATGAAAATTTTGCTCAAGTTGCTGT AAGAAGAAACCTTCATCTGCACCTTTTGCATGGCTCAGAATTATTGCTGAGCCAGATCGCAGATTATGTAAAAGTCATTTCTGAATCAGAGAACAATACT AGATCATTCCAAGGCATTAGAGCTCCCAAGCCACTTGGAGATCTAGTCGAAAGTATTGCTGGGGCTATGCTAATTGATACCAAGCTCAATGTTGACCAAG TGTGGAAAGTTTTCAACCCTTTGCTATCTCCAATTGTTACACCTGATAAACTTGAACTGCCTCCGTGGCGTGAATTAAATGAATTATGTGACTCTCTCCG GTGTTTTGTGAAAGAAAGTTGTGTAAAGAAAGGACCCATGGTGCATGCCACCCTTAGTGTGCAGTTGCATGATACCTTGTTGGTTCGAGAGGGAAAGGGG CAAAATGCAAAAACTGCAAAAGGAGATGCCGCTCTTCATTTGTTAAAGGACCTTGAGAAGAGAGGAATTTCATATAGCAGTAGCGTCTCAAAGAGAAAAC GAGATGCTTCTGGTCTTACTGATGAAAACTCCCTGAAGCCAGTTGCACAGTTAGAATATAAAAGGCAGAAAGTGGATGAAACTAACTTAACTGCGAATGC ACATACTGGTTTGCTGCCTCTCAAAGACACTTCCATGGAAGCCTCTAACCTTGGTGCTTCTGTTCCAGGTTTTGCACAATCACTTTTGTTCTGAGTTTGA TACTGAGCCTTGTCTTCCCAATGACATAATGTTTACTTCTAGGAGAATTTTTCTTATCGCTTTTGCTTCTTCATTTAGTGCGTAGGTCACTCATTCTCTT CACCCCTTACCTTCTACGTCCCTTTCTTTCTCCATCAACGGAAGCATTCATGGTCTCACATGTTCAGTGTTTCGAGATTTTGAGAAGAAAATGACACGGA AATTGGAGCATACTGAAGTGCTATGGTTATTTACAATCTTGCATGCAATTATTGTATGCCCCGTTTTAGCAATGCATATACTTCTGGCAGGTTTTAAAAT TGTCATGAAGAGCTGAAAATATCAGTTCCAGTTCAGTGAGTCATCTGAGTTATTTCAGTGATCACTCTCCTGCTTTAACATCTAAAATCAATAATAAATA CTGCTGACAGTGTTGTTAGAAGCTTCTTTGGTTGACATTCAATTCAGATATAATACATCACTATATTCGTTGATTCCTTGCCATTATTTATTCCGGGTCA GGGAGTTAATTTTCAAAACTACCTGTCAATTAACTTCATTGTGGATTCATGTTTATCAGTTATTGGCTCAATTAATATGAAGAAGGGAGGACCTCGGAGC GCACTATATGAACTGTGCAAGAGACTGCAGTGGCCATTGCCTGAATTTGATTCAACAGAATATAAGGATAGAACTCTATTCCAAGGGTGTGAAGGTCTGG AAGGAAGCAAGGGACAAAACTGTTTCGTGTCGAAAATTAGCTTATGCATACCCAATGGCACCGCTCTAGAATGCGAAGGAGAAGCTAGACCTGATAAGAA GACCTCACATGACTCTGCTGCACTTCAAATGCTTTATGAGCTACAAAGGCTGGGAAGACTTAAGATAACTGATTCACCTACCCTTTCTGTTTCTTCAAAG TAAAAATGATTAGCCTTTGTTTTTACAGGTTTGGATTGAGTACAAAGGAAGGAACATGAATAACTAGTATCATGACTTTGTGGCCACAAAATACACTATG TTTTGTGCCATTGATCTGAACAATTGTCTCAGATCAATGGTACAATATCATAGGTTATATTTGTGGGTGCAAACTTGTGGCACTAGTATTAGTATTACAA AATAAGTATAAAAAATGACCCGAGACAAAAATGGAAAAAAGTTTACTTTAGGTGTTTTAATATAATTCCTCTACAAAGAGGGTTAATTTATAAAACTGCA TGTTCAATGTGACTTGACTTTCATGCAATAATATTGCATGTCCTTCCTATTAGTAGCATTTCTTAATGTACACTTTGTTTACTTTGATGAATTTTTTTTA TCCTAAACCATAAACCTTGGACACATTGCTTTAAATGAAGGAGGCTGATTCGCTTAGCAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_136149; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_395668
| Blastp | Endoribonuclease Dicer homolog 3b from Oryza sativa with 51.05% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 3b from Oryza sativa with 52.44% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435266.1) |
| Pfam | Dicer dimerisation domain (PF03368.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |