Ll_transcript_395507

• Id Trinity: TRINITY_DN43504_c0_g1_i3
• Name Transcript: Ll_transcript_395507
• Sequence: CTGCGTCCGTGTAGTGTCTCCCTATATAATTGTACATTGTATGACACAGAATTGAACAAGAGCTATTAGTCACAGAGAGTGTCTCATTACAGATAAGCCC AAGCTTTTTTCTTAAGTTCTTTGTCAAGATGGCATCCGTTCATGCTAATGTGGCATCGATTGTATGCAAGAATGGTAACAATGGTTGTCAATCGAAGTTC CCGAGTACTGCATTCTTGCCTGGATTTGATGTTGTAGGGAGGGTTTCAAGTGCATGGAAGAAGGAACTTACCCCATCTTACATGGCTTTGGGACCTAAAG CTACATTAACATTTGATCCTCTTGCTACCAATTCAGACAAAACCAAACAGAAGAAAAGTACTGTTGACCCTGCTTCTCCTGATTTTCTGCCTCTTCCTTC CTTTGAACAATGCTTTCCAAAGAGCACAAAAGAACACAGGGAAGTTATTCATGAAGAAACTGGCCATTCGCTAAAAGTTCCCTTTCGACGAGTTCACCTG AGTGGAGATGAACCACAGTTTGATACCTATGACACAAGTGGTCCTCAAAATATAAATCCCAGAGTTGGACTCCCGAAATTGCGCAAAGACTGGATTGACA GGCGAGAGAAAATAGGTGCACCAAGATTCACTCAGATGTACTATGCTAAGCAGGGAATCATTACTGAAGAGATGCTTTACTGTGCCACTCGTGAGAAGCT CAGCCCTGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGGGCTATCATCCCTTCCAACAAGAACCACTTGGAGCTAGAGCCCATGATAGTTGGAAGAAAC TTTTTGGTGAAAGTAAATGCAAACATCGGAAATTCTGCGGTTGCAAGCTCTATAGAAGAAGAAGTTTACAAGGTTCAGTGGGCAACTATGTGGGGAGCTG ATACAGTCATGGATCTCTCAACTGGTCGTCATATCCATGAAACTCGAGAGTGGATCCTACGCAACTCTTCTGTACCAGTTGGGACTGTACCTATTTATCA AGCACTTGAAAAGGTTAATGGGATTGCTGAAAATCTTACCTGGGAGGTCTTCAGGGATACCCTGATCGAACAAGCTGAACAAGGTGTTGATTACTTCACT ATCCATGCAGGAGTTCTTCTGAGATATATTCCATTAACAGCGAAGCGCATGACTGGTATAGTCTCTAGAGGAGGATCTATTCATGCAAAATGGTGCTTAG CTTATCATAAGGAGAACTTTGCTTATGAGCATTGGGATGACATACTTGATATCTGTAATCAGTATGATGTGGCCTTATCGATAGGCGACGGGCTACGACC TGGATCAATTTATGATGCCAATGACACAGCTCAATTTGCGGAGCTCTTGACACAGGGAGAACTGACCAGAAGAGCATGGGAAAAGGATGTACAGGTGATA AATTCATCAAACTTTTTTTATAACACGGTGTTGATAAATTTATGGCAAGATTGCAGTATGGTGATAACATGATCTCTATATATCTATTAAGTGCATTTAT ATTTTCATTCTTGAATCTTGATTGTTTAGCATGAACAGTTTGGAACTTGAATAGGGGTAATTTGTTTGTTTTAGTCACTTGGGTAGGAGTAGACTATTTA TCAACTGCGTGAGACTGTGAGCTGTGTTAATCTCACCATTGCTATGATGATTGGTGCTTAGTTAAATTCCTAGTTGCCTTCATTACAGATTAAACATACT TTTCTATGGTTTGGAAAGAATTTAAAATGCAATGATTCTATTGATTTATATTAAACCATCATGAGCTGATGTGATGTTACAATGAACAATATTATCCGGA GAAAATGAGTTATTTTGTTTACTTGGACTCCTTTTACAGGTGATGAATGAAGGACCTGGACATATCCCAATGCACAAGATTCCTGAAAACATGGAAAAAC AACTAGAATGGTGCAATGAAGCACCATTCTACACTCTTGGTCCTTTAACAACTGATATTGCTCCTGGTTATGATCACATCACCTCTGCAATTGGTGCTGC CAATATTGGGGCACTAGGTACTGCTCTTCTCTGTTATGTGACTCCAAAAGAACACCTTGGATTACCGAACCGGGATGATGTGAAGGCTGGAGTTATAGCT TACAAGATAGCTGCTCATGCTGCTGATTTAGCCAAGTGTCACCCACTTGCTCAAGCCTGGGATGATGCACTAAGCAAGGCGAGATTTGAATTTCGATGGA TGGACCAATTTGCTTTGTCATTGGATCCAATGACAGCCATGTCCTTCCATGATGAAACATTGCCTTCGGAAGGTGCTAAGGTGGCCCATTTCTGCTCTAT GTGTGGCCCTAAATTCTGCTCTATGAAGATAACCGAGGATGTGCGCAAGTATGCAGAAAAGCATGGCTATGGTGATGCTGAAGAAGCCTTAAAACAAGGG ATGGAGGCTATGAGTGCTGAATTTCGAGCTGCCAAGAAAACTATCAGCGGTGAACAGCATGGTGAAGCTGGTGGAGAGATTTACTTGCCAACAACTTACT TAAGCTCCAAAGAGAGTACCATCTGAGATAACTTGGAGCTAGCTACACAACTGGATTATCTGGATGGTGAATCAATTTCAAGCTAGGGGAGAATACAAAT ATGAGTTTGCTGGCAACTTTTAAGAACTTTAATCTTTATCAAACTTTTCTGGTGTTCTCCAATTGTCAGGAATAAATTGCTCCAGTTTTATATTTAAGAC CTTCTTTATCTATTATTTTGAGGCATTTTATTAACTCCAAATGCACCAGGGGTGCCTCTATCTGCATGAGCTCCTAAGATTAAGTTAGGATGCTAGCAGA TTAGGCTGAGACAGTCCCTTTGAACCTGAACAGGGTGATGCCTGCGTAGGGAGTGTGCAATTTTTTTTCTGTATGCTTTTGCAGGGAGTGTGAATTATAT ACATGGATTGAGCTTGGATTGTTCTTGGGAAGCAGATTCAGCAAGATGGCAAAAATGTAGCTGCACAAGAAGCTCCTACTACCAGATAATAAAGTAATGC AACATAAATTCTTTTCAAAGAAAAAACAACATAAAGTACACAATCTTACTTACTGATTTATATTATGAAAGATCAAGTTTTCACTAATAAAACTACTCAC CATATTAATTTGGCATGTCAAAATATATGAACATAGTATCTATGATTTTTCTTTTGTGCAACAAGATAGATTAATCTATTGGGAAACACAGACATTATCA AAGTAAATTTTGTCACTTTATTAGTTCTAATCCATCCTATCTTGTTTAAGGAAATCTATCAGAGTTATTTTACTGTAAATCTATATTGTGCATTAACTTT CAGCAATAGTGCTGAGATAAAAATAAAAAATCCATTTTTGTTATGACCAAAAAAATCTCATATTTCAATCCAACATAGCTTCATAGATGCATGGGAAACA AAAAGCTAGTCTTTTACCTGGGCCATTATGTATTCTACTTGAAGTTTTCTTATTAGGAAGTGAGTGAAGATGTTTAGATAAGATTATATAATGTTTTCAT TACTTCTCTATATGGATGAAATTTTGCACTCTCTGAAGATTCACAAATTCTCACCACATGAAGGATTGGTTCAATGAAGTTGCTTGGCACAGGTTGTTTT ATGTTATTACTAGCTTGTTACAGTACATATCATTAACTAAACTTTTGTTTTGTATGTCAATAACCACTAGAGTGAAATTGGTGTAAGCAAAATGACTACT ACTATCATTCTTGAATAGAAATAAGACTTTGTAAACAGTCTTCTTTCTTCTGTGGTTCTGTTGAAATTTAATCTGCATAAAGAGTTACTCATTATTGTTG GAGTTACAAATATTTATAAGCCATAAATAAAAATTCCATGCCTAAAACATTACATGCACTGATGACAGTGAGTTCATATTTTCTGAACATTTAGCAAGTG GTTGCCATATTCTGATCATTTTGCAGCAGATGATATCATGTTATCTTAGTACTATTAACTACCCATGACAAATTTCCTATCAAGGTTGAAACTTGGCCCA TATTTAAGGCATTAAATCTTGTCAAGTTTATCATAATCTTGAACTTGGTTCAATTCTATCCAACTTTTGTAACATTTTCATAAATGAATTAGGGTCTAGT AAACTAACTTATGATACCTCATGATAAAGCTAAATGTATGATATGGTAAGGTCCATTTACAATGAAAACTTCTCACGCTTGTATAGATCAAAATCTAAGT GAATAAACTGAAATATAATGCATGCATTTGAATTAGATATTTGGTATGTAGACTTTGTTCAATTCTTGGCAAACAAGCCACCAAAACCACCATCCTTCTT CTTTTGAGTCACTACCACAGAGTTCTTGCGGCTAATGGTGGTTGCCTCCTCCATTATTTTTCTCCACCATCTTCAGGATAAGATTGGTTTATAGCAGTTG ATCTTATCCTCTAGAACATAAAAACATAGTGGTGACTTCAAAGTAGTCGTATAACAAGCGCGTCATAAATGTATGAAGGATACATGTATTTTTTTCCTTA AAAAAAATGGACATGTCTTCAACTTCTCAGTAAAAGGAGTGTGATTTAATCCAGAACAAATAGCATATACAACTGTAATATAAGGGTTTGTTTTGAAGTT GTTTAGGGGAAATAAGAGAAAATAAAGGGCTCGAG
• Tissue: pods
• Gene name: LI_gene_136150;
• Additional information: details;

Expression of Ll_transcript_395507

FPKM

• PAB: 0
• PNAB: 1.7
• PS1: 0.7
• PS2: 0.1
• PS3: 0
• PW1: 1.1
• PW2: 0.5
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_395507

• Blastp: Phosphomethylpyrimidine synthase, chloroplastic from Arabidopsis with 82.82% of identity
• Blastx: Phosphomethylpyrimidine synthase, chloroplastic from Arabidopsis with 82.82% of identity
• Eggnog: thiamine diphosphate biosynthetic process(COG0422)
• Kegg: Link to kegg annotations (AT2G29630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455701.1)
• Pfam: ThiC-associated domain (PF13667.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;