| Id Trinity | TRINITY_DN43560_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_395677 |
| Sequence | AGATGAAATTATGGCTGAATTGGTGCTTATATGGCTTAGGCATCCCTCACCATACGAGCTAGGTTTTGGTGTTGAGTTAGGCCTAGCTTGACCAACTCAT CTCTTGAATAATTCCTGTCTGAGATGCAAATAAAAGTAATACAGGCAGAGCTTAACCTAAACATGTCATGATAGTTTATGCTAAAATTAGTTCTCTGCCC ACATTTTCAAGGCTTCTGTATACCGTCCAGCATAATTTACTATTCTGACATGTAGTGTTCGTTTTGTTCATGGGCATATTCTTAAATAAAGGTCCATCGG GTCTTGTCTACTATACGTCGCTTCAAATTGGAGACAAATGATGAAATATTCAGATGCATGATACACTTGTTCTTGAAAATGAAAGACCATCAAGGTGCAT ATAAGATGCTTGATTATTTGGAGGAAATAAATTTGAAGCCAACAGCGAGCATGTACAATGTCATCATGGCAGAGTGTTTCCGTGAGAAAAACATACGCGA TGGGGTCAGGGTCCTTGAGCACATGCAAAATGCTGATGTAAAAGCCGATTCACAAACTTTCAGCTACCTGATTAGCAACTCTGAAACTGAAGACGATATA GTAAAGTATTATGAAGAACTGAAACAATCCGGAGTTAAAGCTACAAAGCAAATTTTCATTGCCCTTATAAATGCTTATGCTGCTTGTGGACAGTTGGAGA AAGCTAAACAGGTAGTCTTAGATCCATTGATACCAGTGAAGAGCTTGAACCAAATCAAGAGTATTCTTGTCTCAGTTCTTGCATCACATGGGCAATTGTC TGAGGCTCTCCTTATTTACGAGGAAATCAAGCAAGCTGGACACACTCTAGAGCCAAGATATTATGAATATCATTGTGAGATTTTAATTATATTAGTAATT TTGTAATTTTTAACTCGGCAAACATTCATAATCAACCCAGTGGACATTCATAGGAGCGCACTCATTCTGATGGAGAGTTGGATAGGTTGCTTTTGCTACT TGAGGAATTGAATGATACAGACTATTGGAATGGTGCTTGCTGCAGAATCATCTTGTATTGTATTCTGAACAAGCATTTAAGTTCTGCTGTGGACTTGTGC AAGCTCCTCAAAGATAAGTTCCAAAATGATGAACTAGTTATGGATGTTCTCTTTGATAAGGTATTTTCACCAATCGAGCTCCTCGAGTCAGAGTCCAGAC ATTTGCACACTAGCCTCGAGTTGCTTTCAGAAATGAAGGATAAGCATGGCCTTTTGTTCACACAGGAATGTTTTGATCTGCTAAGTGCTCGTGCTAACAC CACTGATTTACATAATGCTGAATGAGGCTCCTTAACAAGAGGGATAAGTAAGGTGCTCTTAACCAAGTATGCTACTAATAGGGGCTTATGTACTCACCTC CTTGACTTTCCAGATATACTGTAGTAATGGATTGCCATTCAAACAACAAAAAATGGATTTTGGTACAAAGTTCAATCCAATTTGCACTAATGTTCTCTTT TAGGCCATTGGAGTCAACATTGGATGCAAGAACCTCATAAGAGTCTAACATACTTATTCCTTTTTATATGTAAATATACTATCAGATAATGAAAACTATT TCTAAGTGTAAGTTAGGGATGAAATCCTACTCTCTTATGCATGAGTTCAAAGCTTGAATTGATCTTCATATATTCTCAAAATGTTAAGCTTACCAGAATT AAATACCTGCCTGACTATCTTATATTGTTATTTTTTTTTTGAAGTATTATTTTTCTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_136242; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_395677
| Blastp | Pentatricopeptide repeat-containing protein At4g04790, mitochondrial from Arabidopsis with 50.9% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At4g21880, mitochondrial from Arabidopsis with 48.68% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT4G04790) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458206.1) |
| Pfam | Pentatricopeptide repeat domain (PF13812.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |