Ll_transcript_277985

• Id Trinity: TRINITY_DN43788_c0_g2_i2
• Name Transcript: Ll_transcript_277985
• Sequence: AAACTCTATACTCTATAGATTTTCTTACTGATAATTCTAAAGACACACCTCGAAACTCCAATCTGTCATGTCTTTTTAATTTTTATGTTGCAAAAAAGTT TCTGAATTGAATTCATGTCCATGACTTTGGTGAACTAACTTACAGTGCATGATTAATTCCACTGGACCGTGAAAATGGCTACACCATCTCTGCGACTCCC ACTCTTCACATTACTCACCAAAACCCCATACCCACGTTTCCGAAGCAGGTGGCGTTGGTTCCGTCATTTCTCTTCTTCCACTGAACCCCAACTTCAACAT TCTTGGCAACCCGTTCGTAAGAAAAAGGTGGTTATGCGCGTCGGATATGTTGGCACCAATTACCGAGGTCTCCAAATGCAGCTGAATGAACATTCACTCT CAACTGTTGAGAAAGAACTAGAAATTGCCATATTCAAAGCTGGTGGCATTCGTGATAGTAATTTTGGGGATCTGCAGAAGATCGGATGGGCCAGAAGTAG CCGAACGGACAAAGGGGTTCATTCTCTGGCAACAATGATATCCTTTAAAATGGAAATCCCAGAAAATTCTTGGAGTGAGGACCCTAATGGTATTGCCCTG GCAGATTGTATTAACTCTTATCTTCCTTCTGATATCAAAGTTTTAAGCGTTTTGCCTTCACAAAGGAGCTTTGATCCCCGGAGGGAGTGCATTATGCGCA AGTATTTGTATGTCCTCCCTGCTGAAATTATTGGTATCCAAAGCCACTCTAGCAATGATGAAATTGATTACCACATATCTGAGTTTAATAACATTCTTAA AGAATTTGAGGGGGGACATCCTTTCCATAATTATACGGCTAGGTCCAAGTACAGGAAACACTCACTTCGTAGGCACTCATCATCAAAGAGTGGCACATCT ATAAGTACGAGCATGTCAGCCTCTGAGTCAGACTGTGAGGATAATGATGGCGGAGAAAATTTTATATTTGACGAGGCATTCACAGAAAATATAATGTGCC ATAGTAAAAAAAATTCAGAAACTGATGATTATGGTGAACCTGTTGTTGAAACTAGCAATAAAAATGGAAACGGTTTGTCTGGTCAAGATTCCAAATTGGT TGTTCGTGCAAAATGGTTACATGAACCTGATGAAGCAGATAGATTAAATGCTTCCCATTTTAGAAAAGTTTTCCAGTGTTCTTGTGGAAAGCTGGAAAGA TCACTTGGATATAATTATGTTGAGCTCTCCATACATGGAGAGTCCTTCATGTTACATCAGATACGAAAAATGGTTGGGACAGCTGTGGCGGTAAAACGCA AGTTGCTTCCCAAAGACATCCTAATGCTGTCACTGTTAAAGTTCTCTCGAATTATTCTGCCCATTGCGCCACCAGAAGTTTTAATATTAAGGGCAAACAG CTTCATATTACGAACGCGGCCAGGAAAAGTAACAAGGCTTGAAATGCTGACCATAGTTGAGTCAGATGAAATAAATAAGGTAGCTGATGATTTTTACACA TCAGTTATGTTACCTCAAGTTTCAAAATTTTTGAACCCATCAAAATCACCTTGGGAAGAATGGATTAAAAAATTGGATGCTCACACAAGTATACCAAATG ATCAGTTGGATGAGGTCAGGAAAGCTTGGAAATTGTGGAAAGGAAATCTTGAAAGTTCAACTAGTATTCATCCATCATAACTGAAGGAAATTAAAAGGAA AAACAGATAAATGTCCATAAGGCTTCTGTACTACGTTTGATATTCAGGCTACTTGGCCGGTGATCTATCAGTGGACAACCATGCTGGCTGAATACCTTTG TTATGGAATAATTAGACCTAAGAGTAAGAGATGTGTTTTAATTGGCTTGAATGTCCAGTGGAAACCAGTTCTCAAGAAATCATCAAGCCGACCTGTGACA ACATCATAGACTGGCAAATTTTCACTAGTCAAGGTAAGTATCAAACTTCATCCCCGAGCAGGTACAATAATATTTCTACATTTAGTTAGAGATAGGAGAC TTATGACTTGCTACGGGTTATTATTTTCACTCTGAAAAGGCATATACTTCATTTCATGCTGATGTTTTTATCTTCTGCTTAAAGTATTACATACATGGTG TTCATGATTTTTGGGATTTTTAATGAATAAACAAATTTCAATTTCCTTTTCTAGAGATCCTGGTGTTTATGATTTTGATACCAATACCTTTTTATTTTAG CAAGCCAACACGCGTGGGGTGTTGCTGCTGCCCCATTGAAAGTTTTGTGGAACTGTCGTGGCCTAATGGCTATTTGAGTATAGTATAAGACCCATGCTAT TTTCTCTAATGGCTCTTGATAGCTACCAAGTGGTCCAATTATACATAATACAGTCTTGTACATGAGAAATGATATGGTCCATATATTTCTGAGTTCCATG AACTCTTCTATACTATTTCACAATGCTGCACTCGATTGTATGTTTTTGCCATTTCTAGCCAGAGTTTCTCCAGCATTGGTTATCTGTTCTGCTTTTATGC AAAGTTCACCTCTTCTTTTATTGTTCTGTTTGATAGATCATGACATT
• Tissue: pods
• Gene name: LI_gene_136596;
• Additional information: details;

Expression of Ll_transcript_277985

FPKM

• PAB: 0.4
• PNAB: 4.5
• PS1: 3.8
• PS2: 2
• PS3: 3.2
• PW1: 3.2
• PW2: 2.2
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_277985

• Blastp: Putative tRNA pseudouridine synthase from Arabidopsis with 54.42% of identity
• Blastx: Putative tRNA pseudouridine synthase from Arabidopsis with 67.03% of identity
• Eggnog: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity)(COG0101)
• Kegg: Link to kegg annotations (AT2G30320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456938.1)
• Pfam: tRNA pseudouridine synthase (PF01416.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;