| Id Trinity | TRINITY_DN43788_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_277986 |
| Sequence | AAACTCTATACTCTATAGATTTTCTTACTGATAATTCTAAAGACACACCTCGAAACTCCAATCTGTCATGTCTTTTTAATTTTTATGTTGCAAAAAAGTT TCTGAATTGAATTCATGTCCATGACTTTGGTGAACTAACTTACAGTGCATGATTAATTCCACTGGACCGTGAAAATGGCTACACCATCTCTGCGACTCCC ACTCTTCACATTACTCACCAAAACCCCATACCCACGTTTCCGAAGCAGGTGGCGTTGGTTCCGTCATTTCTCTTCTTCCACTGAACCCCAACTTCAACAT TCTTGGCAACCCGTTCGTAAGAAAAAGGTGGTTATGCGCGTCGGATATGTTGGCACCAATTACCGAGGTCTCCAAATGCAGCTGAATGAACATTCACTCT CAACTGTTGAGAAAGAACTAGAAATTGCCATATTCAAAGCTGGTGGCATTCGTGATAGTAATTTTGGGGATCTGCAGAAGATCGGATGGGCCAGAAGTAG CCGAACGGACAAAGGGGTTCATTCTCTGGCAACAATGATATCCTTTAAAATGGAAATCCCAGAAAATTCTTGGAGTGAGGACCCTAATGGTATTGCCCTG GCAGATTGTATTAACTCTTATCTTCCTTCTGATATCAAAGTTTTAAGCGTTTTGCCTTCACAAAGGAGCTTTGATCCCCGGAGGGAGTGCATTATGCGCA AGTATTTGTATGTCCTCCCTGCTGAAATTATTGGTATCCAAAGCCACTCTAGCAATGATGAAATTGATTACCACATATCTGAGTTTAATAACATTCTTAA AGAATTTGAGGGGGGACATCCTTTCCATAATTATACGGCTAGGTCCAAGTACAGGAAACACTCACTTCGTAGGCACTCATCATCAAAGAGTGGCACATCT ATAAGTACGAGCATGTCAGCCTCTGAGTCAGACTGTGAGGATAATGATGGCGGAGAAAATTTTATATTTGACGAGGCATTCACAGAAAATATAATGTGCC ATAGTAAAAAAAATTCAGAAACTGATGATTATGGTGAACCTGTTGTTGAAACTAGCAATAAAAATGGAAACGGTTTGTCTGGTCAAGATTCCAAATTGGT TGTTCGTGCAAAATGGTTACATGAACCTGATGAAGCAGATAGATTAAATGCTTCCCATTTTAGAAAAGTTTTCCAGTGTTCTTGTGGAAAGCTGGAAAGA TCACTTGGATATAATTATGTTGAGCTCTCCATACATGGAGAGTCCTTCATGTTACATCAGGTAGATCTTTGTTCCATATGATTTCTTAATTTTTTAATTC TCACAGAACTTCTGTTTGGTTTCTTACATTTTTATGCTACCCAAGATTAAAGTGATATGAGTGTATAAGTAGATACTAGTATACTTAATCTGTGGTAAAG TCTTTATGCATAAACTTTGGTGGCATTTAATACATAGTCACTAAGGGTGGTTATGCATACTCCAAGCACATTTCACCATTGATCTTATAAAAATAGATCA ACTTTGGATATCAATTATGTGTAATTTAAAGTATAGGTCACCTTAACAACTTGCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_136596; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_277986
| Blastp | Putative tRNA pseudouridine synthase from Arabidopsis with 54.01% of identity |
|---|---|
| Blastx | Putative tRNA pseudouridine synthase from Arabidopsis with 67.03% of identity |
| Eggnog | Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity)(COG0101) |
| Kegg | Link to kegg annotations (AT2G30320) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456938.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |