Ll_transcript_352001

• Id Trinity: TRINITY_DN43881_c0_g1_i2
• Name Transcript: Ll_transcript_352001
• Sequence: CAGCAGATAAAATTGTGATGATGGACGGTGGACAATGGTCACAGCCGTCACAGCCATGTCACCCAACAATGATGACTGTTAAGTACTACAATAGTGTTAT AAAAAACCGCAGACATGTTAAAGTTATTTTCTTTCTTGTTTGTTTGTTCGACTTGGTCATGCAAAATCTGAAACTCAATTTGTAATTCAGGTTGGTTGGT CTTTGTTTCCGCGTGAACTAAAGAGAATTTCTGGTATGGAGGGAATCAACCTTAAAGAATAGAGAGATTATGAGATGGGACAATTGCTTTTTGTTCACCT TGCTTCTATGCGCTAGAGCTGTGGATTCTAATCCTAATATTTCTTATTCTAGCTCTAGAAGACCTCCCTTTGATGGGAACTGATAGTGGTGAAGACGTGG AGAGGTTACCAAATCCGCACTCTTTTAAGGTACATAGTAAAATGTGCATAGAACTCATGAAATTAGTTGATAGAATCTCAAGTATATTTCCAGACATAGA GACGGCACGGCCTGGATGCTCATCAGGAATACAGGCACTTTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTGCAACATTGCTCTGAATGC AGTAATCTCTACCTGGCTGTGACAGGGGATACAGTACTCTCGAGATGCCAAAAGACAAGAATATCACTAAAGCAAAGCTTAATCCAGATTCAGGGAATGC TTCCAGTTCTGTTGGCTGCAGCGGTTTCTGGAATAATTGATGATCTTGACTGTGCAAAATTTGTCCTGGACTCTGCTGAAGAAGAGGCTGGAAGGGTTGT TAGAGAATTGCTTCAGCAAGGTAATTCAGCCTCAGATTCAGTGGACAATTCTGAAGTTCAAGCTCTTAAGTTTGCAGCACCAAGACTTAATATTACATCT CCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAATTGGACCAAATGACCCGAAAAAGAAAATGATCTTGAGATATCTTTTGT ACCTACTGAAAAAGCATGGAAACCTCATCTTGGAAGAACAAACGGAGAAGGCCTATTCTCCTAATGAAGAACCTATTGCAACCGATAACTCTAGTCATGA CTCTCTTCAAAGGCATCATGTTGAGTCTGAGTCTTTAGACTATGGTCAGTGTAGAACTCAAACCAGTGAGTTGGGTACAGTTACACCTCCGGAGGAATAC AAATGCCCAATATCGTCAAGATTGATGTATGACCCTATTGTAATCGCTTCCGGACTGACATATGAAAGGATATGGATACAAAAGTGGTTCGATGAGGGTA ATGATATATGCCCAAAAACTAAAGAGAAATTAGCTCATATGGGATTGACTCCTAACATTATCATGAAGGAGTTAATATCAAAGTGGTGCAGGAACAATGG CGTCTCCCTCCCCGATCCAAGTAGGCAAGCAGAAAACTTTCATTCATGGGAAACTTCCTCCACTTCCATTAAGAGTCTTGGAAGTTATTACAATGACTTG AACTTGCCAATGGATCATAGTTTCATGTCACTTGGATCCTTGGATGCAAGTTATAGTTCAGATGTCTGGCATGCTAAGATTACTCATGGCTCAAATTTGA TTAAGAATAGTGACAATTCTCACAAAGATAGAGCTGATGCAGCGATACAGGATACAGATTTGATGCTTTTGTCTGAACTCCATGATCTTCAATGGGATTC TCAATGCAAGGTCATTGAAGATCTGAAAGATCATGTGAAAATCAATCACCAAGCCTTTTCTTCTGTATCACCTGAAGATTTCATTAAACCACTCGTCAAA TTTCTGAACAATGCATATGATCAACATGAGGTTAAAGCACTGAGAGCTGGAACTGAGCTGCTATTGGAATTAGTGAATAACTGCAGGCATGATTTCTTTT CCCCTTCCTCGCCTTGGTTCTTTGTATGTTGATAATTATTTTGGATTGGTGACAATTATCATGAAACAGTAATGACTAAGTTTAGAATAAGAAGAAAAGG TTTTTTAGAATTGCTAGCTTGCTTGTTTAAGTTGTGCACTTGCTTTTGATATTGAAAATAACATTTTTTGTAGTTTTTCATGCAGAAATGGCCTGACTAA TTTAAGCGAAGATGTGTTCAGCATGTTGACAAGTTTTCTTGATTCAGAAGTGATAGGAGAAGCTCTTGCCATAATGGAAGAGCTATCTGGATATTGGTCT AGTAAAGCTAGAATTGCAGCATCTAGTGCACTCACTTCTATTTTAAATGTGCTTGATTCTGATGATAAAGAGTTCCAACAACGAGCTATCAGAATCATGT ATAATTTGTCCTTCAATGGAGAAGTCTGTCACCACTTTTTATCTCTCAAGTGCATCCCAAAATTGCTGCCATTTTTTATAGACAGGTCCCTTTTGAGATA TTGCATCTGTATATTGAAAAATCTTTGTGATACTGATGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTCAGTTACTGAAATACTTGAG ACAGGTAGCAATGAAGAACAAGAACATGCACTGGTTGTTCTAGTCTCTTTATGCTCTCAACGTGTGGATTATTGTAAACTGGTTATGGATAGAGATATTA TCCTTCCTCTTGCCTATATCTCCAAGAATGGAAATGATAAAGGAAAAGCAGCTGCGATGGAACTGCTACGTCTTTTGAGAGACGTCGATTATGTTGAGAA TGAAGATTGCCTTGAACCAAATCTCAACACCCCTCAAGAATCCAACAATCACCCTCCTCAAGAAAAGAAAACATCAAAAGGAACCTCATTTATGAAGAAA CTATCATTGTTCTCAAAATCCAGTTCACATGCATCAAAATCCAAGAGATGAAACTGAATTCCTCAGCATTTCAACCCATAGTATCCTTCTGATTCGTACT ACGGAGACTGCAGATTATTTGCCTGATAGGAGGCATTTTGGATTTGCTAGGTAGCAGACATGCTTTTAAGATGGAGCTTAATCTTTGTGGATATAGCATT CTAAATAGTCATTTACAACACCTCTGCTGCTTAATTTTGCACTATACTACAGCAGATTGTATAAGGTTGTAAAGTTTTGCTTATGATTTGATCTATTTTT TAGATATTCCAATTCAAGGCTTGTCTCTTGTTAAGATAGTTGATAGTTTTCCCTTTTCTTCTTCCTGTCAACTTACTAGGGACCAGTCACTTTTTATTTG GGGGTTGATTCTTATTGTATATATATTGCACACTTTCATATTTTGAGCACTGATTGTAAAATAGATACTGATTAGGGCTTTCATGATGACTAATGGCGTT TGAAAAGGTGATGAAAATTGTATTTTTAGCTCTTGCTAGACGCATGTATATAATAAAGTCACCTGCATGGCTGAAT
• Tissue: pods
• Gene name: LI_gene_136749;
• Additional information: details;

Expression of Ll_transcript_352001

FPKM

• PAB: 0.2
• PNAB: 0
• PS1: 0.3
• PS2: 0.1
• PS3: 0
• PW1: 0.4
• PW2: 0.5
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_352001

• Blastp: U-box domain-containing protein 5 from Arabidopsis with 36.9% of identity
• Blastx: U-box domain-containing protein 5 from Arabidopsis with 36.9% of identity
• Eggnog: U-box domain-containing protein(ENOG410XRTN)
• Kegg: Link to kegg annotations (AT4G36550)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421056.1)
• Pfam: U-box domain (PF04564.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;