| Id Trinity | TRINITY_DN43881_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_352004 |
| Sequence | CAGCAGATAAAATTGTGATGATGGACGGTGGACAATGGTCACAGCCGTCACAGCCATGTCACCCAACAATGATGACTGTTAAGTACTACAATAGTGTTAT AAAAAACCGCAGACATGTTAAAGTTATTTTCTTTCTTGTTTGTTTGTTCGACTTGGTCATGCAAAATCTGAAACTCAATTTGTAATTCAGGTTGGTTGGT CTTTGTTTCCGCGTGAACTAAAGAGGTAGACTTATAATGTTGTTTTCATGAGTAGACCAATTTTCTATTGGTTGCTGTGTTTTCTTTTATTTTATCTTCA ACTCTGCTTTTTTTGTTTACTCGTTCCTTATAGAATTTCTGGTATGGAGGGAATCAACCTTAAAGAATAGAGAGATTATGAGATGGGACAATTGCTTTTT GTTCACCTTGCTTCTATGCGCTAGAGCTGTGGATTCTAATCCTAATATTTCTTATTCTAGCTCTAGAAGACCTCCCTTTGATGGGAACTGATAGTGGTGA AGACGTGGAGAGGTTACCAAATCCGCACTCTTTTAAGGTACATAGTAAAATGTGCATAGAACTCATGAAATTAGTTGATAGAATCTCAAGTATATTTCCA GACATAGAGACGGCACGGCCTGGATGCTCATCAGGAATACAGGCACTTTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTGCAACATTGCT CTGAATGCAGTAATCTCTACCTGGCTGTGACAGGGGATACAGTACTCTCGAGATGCCAAAAGACAAGAATATCACTAAAGCAAAGCTTAATCCAGATTCA GGGAATGCTTCCAGTTCTGTTGGCTGCAGCGGTTTCTGGAATAATTGATGATCTTGACTGTGCAAAATTTGTCCTGGACTCTGCTGAAGAAGAGGCTGGA AGGGTTGTTAGAGAATTGCTTCAGCAAGGTAATTCAGCCTCAGATTCAGTGGACAATTCTGAAGTTCAAGCTCTTAAGTTTGCAGCACCAAGACTTAATA TTACATCTCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAATTGGACCAAATGACCCGAAAAAGAAAATGATCTTGAGATA TCTTTTGTACCTACTGAAAAAGCATGGAAACCTCATCTTGGAAGAACAAACGGAGAAGGCCTATTCTCCTAATGAAGAACCTATTGCAACCGATAACTCT AGTCATGACTCTCTTCAAAGGCATCATGTTGAGTCTGAGTCTTTAGACTATGGTCAGTGTAGAACTCAAACCAGTGAGTTGGGTACAGTTACACCTCCGG AGGAATACAAATGCCCAATATCGTCAAGATTGATGTATGACCCTATTGTAATCGCTTCCGGACTGACATATGAAAGGATATGGATACAAAAGTGGTTCGA TGAGGGTAATGATATATGCCCAAAAACTAAAGAGAAATTAGCTCATATGGGATTGACTCCTAACATTATCATGAAGGAGTTAATATCAAAGTGGTGCAGG AACAATGGCGTCTCCCTCCCCGATCCAAGTAGGCAAGCAGAAAACTTTCATTCATGGGAAACTTCCTCCACTTCCATTAAGAGTCTTGGAAGTTATTACA ATGACTTGAACTTGCCAATGGATCATAGTTTCATGTCACTTGGATCCTTGGATGCAAGTTATAGTTCAGATGTCTGGCATGCTAAGATTACTCATGGCTC AAATTTGATTAAGAATAGTGACAATTCTCACAAAGATAGAGCTGATGCAGCGATACAGGATACAGATTTGATGCTTTTGTCTGAACTCCATGATCTTCAA TGGGATTCTCAATGCAAGGTCATTGAAGATCTGAAAGATCATGTGAAAATCAATCACCAAGCCTTTTCTTCTGTATCACCTGAAGATTTCATTAAACCAC TCGTCAAATTTCTGAACAATGCATATGATCAACATGAGGTTAAAGCACTGAGAGCTGGAACTGAGCTGCTATTGGAATTAGTGAATAACTGCAGGCATGA TTTCTTTTCCCCTTCCTCGCCTTGGTTCTTTGTATGTTGATAATTATTTTGGATTGGTGACAATTATCATGAAACAGTAATGACTAAGTTTAGAATAAGA AGAAAAGGTTTTTTAGAATTGCTAGCTTGCTTGTTTAAGTTGTGCACTTGCTTTTGATATTGAAAATAACATTTTTTGTAGTTTTTCATGCAGAAATGGC CTGACTAATTTAAGCGAAGATGTGTTCAGCATGTTGACAAGTTTTCTTGATTCAGAAGTGATAGGAGAAGCTCTTGCCATAATGGAAGAGCTATCTGGAT ATTGGTCTAGTAAAGCTAGAATTGCAGCATCTAGTGCACTCACTTCTATTTTAAATGTGCTTGATTCTGATGATAAAGAGTTCCAACAACGAGCTATCAG AATCATGTATAATTTGTCCTTCAATGGAGAAGTCTGTCACCACTTTTTATCTCTCAAGTGCATCCCAAAATTGCTGCCATTTTTTATAGACAGGTCCCTT TTGAGATATTGCATCTGTATATTGAAAAATCTTTGTGATACTGATGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTCAGTTACTGAAA TACTTGAGACAGGTAGCAATGAAGAACAAGAACATGCACTGGTTGTTCTAGTCTCTTTATGCTCTCAACGTGTGGATTATTGTAAACTGGTTATGGATAG AGATATTATCCTTCCTCTTGCCTATATCTCCAAGAATGGAAATGATAAAGGAAAAGCAGCTGCGATGGAACTGCTACGTCTTTTGAGAGACGTCGATTAT GTTGAGAATGAAGATTGCCTTGAACCAAATCTCAACACCCCTCAAGAATCCAACAATCACCCTCCTCAAGAAAAGAAAACATCAAAAGGAACCTCATTTA TGAAGAAACTATCATTGTTCTCAAAATCCAGTTCACATGCATCAAAATCCAAGAGATGAAACTGAATTCCTCAGCATTTCAACCCATAGTATCCTTCTGA TTCGTACTACGGAGACTGCAGATTATTTGCCTGATAGGAGGCATTTTGGATTTGCTAGGTAGCAGACATGCTTTTAAGATGGAGCTTAATCTTTGTGGAT ATAGCATTCTAAATAGTCATTTACAACACCTCTGCTGCTTAATTTTGCACTATACTACAGCAGATTGTATAAGGTTGTAAAGTTTTGCTTATGATTTGAT CTATTTTTTAGATATTCCAATTCAAGGCTTGTCTCTTGTTAAGATAGTTGATAGTTTTCCCTTTTCTTCTTCCTGTCAACTTACTAGGGACCAGTCACTT TTTATTTGGGGGTTGATTCTTATTGTATATATATTGCACACTTTCATATTTTGAGCACTGATTGTAAAATAGATACTGATTAGGGCTTTCATGATGACTA ATGGCGTTTGAAAAGGTGATGAAAATTGTATTTTTAGCTCTTGCTAGACGCATGTATATAATAAAGTCACCTGCATGGCTGAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_136749; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_352004
| Blastp | U-box domain-containing protein 5 from Arabidopsis with 36.9% of identity |
|---|---|
| Blastx | U-box domain-containing protein 5 from Arabidopsis with 36.9% of identity |
| Eggnog | U-box domain-containing protein(ENOG410XRTN) |
| Kegg | Link to kegg annotations (AT4G36550) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421056.1) |
| Pfam | U-box domain (PF04564.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |