| Id Trinity | TRINITY_DN43950_c0_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_425317 |
| Sequence | ACTAGACCTATTTTTTTGCCACTATATTTTTCTTCACCTTTTCTCTTTCTTGAACCATAAACCCTTAATATTAATATAAACCTCTTCATATCTCTCATTC CTTTCAAAGTAACGAATTCGAAAAACCCTATGGAAGAAGAACACACCGAATCCTTCAACGATGCCTCAGATCTCTGCCACCAACTCATGGACCGTTACTC CAACTCCTCCGCTCCACAGCACCGCCACCTCCTCGCCACCGCCGCCGCACTCCGCTCCAACCTCTCCTCCGAATCCCTCCCTCTCACTCCCTCCGCCTAC TTCGCCGCCGCCATCTCCGCCATCGACTCTGAGACGCTCGACGCCACGGCTCTCTCAGCGCTCGTCTCGTTCATGGCCATCGACCTCCCGCTCGTGAAAC CGGGCGATATCGCGGCCGCGAAGTCGCGGAAGGCGGTGGAGGTAGTGGTGAGGGTGATGGCTAGGGAGGGGGAAGGGATGGGAGTGTCGAGTGTGAGAGC TGCGGTTAAGTGCTTAGGGGTTTTGATTGGGTTTAGTGACTTAGAGGATTGGGATTCTGTTGAATTAGGTTTCGGAACGTTGCTGCAGTTTTCTATTGAT AAGCGCCCTAAGGTGCGAAGATGTGCTCAAGAGTCTCTTGAGAAGGTTTTCCGGTCTCTTCAATCCCCCAATGTTATTAAGGAAGCTAGCAAGTTGGTAT TGTCAGTGCTGAAAAGTTGCATTGCTTTGGCAAAGAAATTAATTTCTTCGAAGACTGTTGATGACCTTAAAGATGATATGATTTCAAAAAATGAAAACTT GGAGGTCTTGCATGTACTAAACGTAGTTAATCTTGCTGCCCCTCACCTTTCTACAAAAATAATTCCGAAGGTTCTTTCGGAAGTGCATAAATTATTCAAT TCTCAGAACACGGCACTGTCACGACACATTCTTAAAACAATTGAAGCAATTTTGGTTGCTTCGACTGTTCGAAATATAGTCTTGGAGATAAACGACATTG TAGTTTCTCTTGCTTTGTTTGTATCTTTGGGAGATAAGAACCCTTTGGATACTGTGATTCTTGCAGCAACCTTATTAAGACTTGCAATGGACTTGCTTTA TACTGGAAAATCAAGTTTGTGGATCAAGAATCTTCCTCTAGTTTGTAAATCTGTAATAGGTCTTCTAACTTTTGAGGGAAACACTGCATCACAGGCTTCA AGTATTTTGAATGATTTGCTCAAGCATCATGTTGGTCCCCAAATTTTATCCATTGGTATAGACCAAACATCTCATGAAAATAGTGAGATAAGCATAGAAT GCAATGCAATAAAGTCGACATGTGCGGTTTTCGAGAATGCCCTTTCTGTTGCTGATGGAATTCCAAATGAGCATGTTTTCTCAGTCATCTCTGTTTTACT TATTGAGCTTGGAGAATTGTCATTTGCGTTTATGAGGAACGTCGTGCTTAAACTTGCAGACTTGATGAATCAAACTTATGGAGGCAATGGTAATAATGAG CATCTTCGGAAATGCATTGGTTCCGCTGTTTTTGCTATGGGAGCAGAGAGATTTCTTACACTTGTACCTATCTCTTTTAACGAACACGACTGTACTTATT CAAATATTTGGCTAGTACACATCTTGAAGCGCTATGTTACTGGATCATCGCTTGCTTACTACATGGATTACATTGTGCCTCTTGCAAAATCCTTTAAGAA GGCTAGTCGTAAAGTTAAAAAGTCAGGGATTAGTCAAGATCTGTTGGCAAGAGCCCATGAACTGCGAGGATTGCTACCTAGCTTTTGTCATCATGCAAAT GACACGTACCAAATTTTTTCTTCTCTCTCCATTGTCCTTATTAATTTTCTTAGAAAGGATCCTTCGATGCATGAAGATGTTTATGCCGCATTACAGATTC TTGTGAATGAGAACAAAGCAGCACTTACCCCTACAAAGAGCGAATCAAATATTTGTGCTGTGGATGATTCTTCATTTGACTTCAGCACACAACCTTCTTA TTCAAAGGAAGCTGCTACCAGAAACATAAAATCTATGGCATCATGTTCGAATCAATTGTTTCATGTCTTATTAGATATATTTATCACTTCACTTCCTGAG AACCGCTTTTCTTTGAAGAAAGCCATTGGATGCCTGGCTTCTATTACTGATTCATTGGTGACCAAAAAGGTTTTTCTATATCTGCTTAAGAGGCTTCAGT TTGTAGACTCTGAAGGAGATGCTGAAATGCCGACGAGTGACAGTAGAGTGGTAGATGCTGATCCAAGTGACATGGATAGAGATACTCAGAGGTGTCTAGT ATTGGAAATAGCATCTTGTCTTGTTGAAGGGGCCAAGGATAATCTTATTGAGATAATATATAATTTAACTATACATTCATTTAAGGCCACTAATGAAAGA GTTCATCATGAAGCATACCATACTTTGAGCAAAATTTTAGAGGAGCAACCATGTTTTTCTTATACAAGATACGCGGAGCTAATTGATTTATTGCTTAGTC TAAAACCTCCAGTTGATATTTCGTTTCTTAGAAGCCGGTATACTTGTTTCCACACTCTCGTGGTCCGCACAGTTGAGAGTAGTCTAGAAGAGGAGGGGGA TTCAAAGGCTTTTCTTATTCTCAATGAAATTATTCTAACATTAAAAGATGGAAATGAGGAGGCTAGGAAAGAGGCTTATGATTTACTCTTAAATGTAAGT TCTAGCTTGAGAGACTCATCAGGTGGTCCTACTGAACCATATCACAAACTAGTTAGCATGATAATGGGATATCTTTCTGGGTCATCCCCCCATATAAAAA GTGGAGCAGTGTCTGCACTGTCGGTGTTGGTATACAAGGATAGCAATCTTTGTCTCTCTGTTTCTGATCTTGTCCCATCCCTTTTGTCTTTGCTCCAAAC CAAAGATGTGGAAATCATAAAAGCTGTCTTGGGCTTTGTAAAAGTGATGGTGTCTAGCTTGCAAGCGAAAGAGTTGCATAATTTTCTCTCTGACGTAGTT GCTGCAATCCTCCCCTCGGCAATGGGTTCAAGACACCATTTTAGATCAAAGGTCACTATCATATTTGAAATTTTAATGCGGAAGTGTGGTTCAGCTGCCA TCAAACTTGTTGTCCCTGAGAAGTATAATGGTTTTCTGAAGACTGTTTTAGAGGGTTATCTCTTGTTGTAAGATTAGTTTGTCTAAAAGCGGTCTGGCGG AGGTTGCAAATTCTTTAGCGACCTTATGACTTATCTTGGCATCCCTTTAGGAGGTAATCTGCATTTGTTATTCTTTTTGGGTTCCATGGAGGGACTTCCC ACATCGGGAATGCCAAACTTTGACTCATCTCCATTTGAGATAGGGATGGAGCATCTGGGTCTGGATTGAGTTAAAGGCAATAGTGTTTGCAGTAAATAGT GGCGGCACTATTTGCCTGATCACGTTTTTATAATCAGGAGGGTATTGGTAGACCCACAGTTAATGTGTGCATAATACAAGGAGTAACAAGGGGCATTAAC TCTTTGTAAGTGCAGAAAGCGAAAATGTCAACAATTATAATGGGTAGTAATTACAGTGAGTGGGGGTAAAAAGAGTAAATGGTCAAATGAATATGCAGTG ATGGGAAATAAATAGTGAGTGAGAGGGGCTGATGGAGGGGTCATTCTGGAACTTTCAAAAAATTGTGATGGTTGAGGCCATTGGTGGTTATAAGCAAACA CTTGGCTTTTCAGGTTTCTTCTTTAGTGTTCAACTATTACTTTTGTTTCTGTAGTTTTTGTTTCCTATCATTGCACTTGGTGCCTTCGTTTTCTGACTGT TCTCTAATTTCAACTAATAATATCTGTTCCTAACTTTCTATCACTTTGTATCATTTTACTTACGGAAAACTCCGGATTCAATTCGAATGCATGTATTGTC ATTTTTATTAAATGCATTTGGCTTTCACATTAACTACCTCAAAAGTAGCAATATATGATATGATTGGTTGATAATGTAAACAGTTTTACACTTGCATAAA AGTTAAACTGGAATTCTTTTCTGTTTGGATTTCTTGCTACTTTTAAGTAAATTCATTTGAAATTTTGTAATATTTAGAGATAGTGAACTGCTGATTGATT TAATATGTTTGGCAAAACTTTCTATCATGCTATCTATCGCCTTGCAGAACCGACGTGGCAAATCAAGTAAAGCAGTCTCTGACGATACAGAAGATATGCA CGACAATTCATTTGCCAAGGGGCCAGAGTGGAGGAAGTTCAAAAGTTCTGATTCCCAAGAGAAGGATATGGGTAAACATAGAAAGAGAGATGGGGAGAAG AATTTTGGGTCAGGCTGGACCAGCAATGAGGAATCAAGATTTGGCAAGAGAAGTAGATATTCCAATGATAAAAATTCAAATGCAGGAAAATCAGAAGGAA ATAGCAATAAGGGCAATAAAAGAGAGTACAAAAGTTTCAGTGAAGGAGGTGATAGAAAACCAAAGTCAACAAACACATGGAAGGATAAATCAGCTTCTCA TGTACCCATAAGAGGTAACAAATTTTCTAATTCAAAAGGGAAATTCAAAAGAAATTGATAGATAGATGAACTGCAATTTAGTCAAAAGCTGGTAAAACAC TACTAAGAAGCATGGCATATCTCATTGATGTGTATGAATGAAGTTTTTGGTGTTTTGCCTGATTTTTCATACTATGTTTTTCATTATCAGTATTTGTAAT GAAATAGATTCAGCATTTTTGTGATGAGAAATAGCTGTAAACAAACTTGTATTCATTTACTAATTATAATTAATTATTGTTTTTCTTATCTTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_136861; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_425317
| Blastp | RRP12-like protein from Gallus with 21.13% of identity |
|---|---|
| Blastx | RRP12-like protein from Homo with 21.48% of identity |
| Eggnog | ribosomal RNA processing 12 homolog (S. cerevisiae)(ENOG410XQ3D) |
| Kegg | Link to kegg annotations (423845) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453105.1) |
| Pfam | NUC173 domain (PF08161.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |