Ll_transcript_504069

• Id Trinity: TRINITY_DN44085_c0_g1_i3
• Name Transcript: Ll_transcript_504069
• Sequence: AAAAAAATGGTCTAACTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGA AGGGATCACAGAGTAACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGC ACCGACGCGCACCTCTACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTAC TCGCTCTCATCGCTCAAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTT GTACCTCCTGCATTATGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCA TGGGCGCTTCGTGCCATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTA GAAAATGTGCTGCTAATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGATTGTTGGACTATTGTTAAATGACCA TTCCCCAGGAGTTGTTGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACAATTTTTCATTGATTGGAAGAAATTACAGAAGGTTGTGTGAGATT CTTCCTGATGTGGAAGAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTATGTGATAGCGAGGCATGGGCTTGTCAAAGAATCGATCATGTGTT CTTTTTATAATAAAGATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTTAAAAAAAATTCTAGTTATGCCAATGAGGAGGCTGTATCTGAATT AGCAAATATGATATTTCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGTCAAGTTCTACAAATAGGGTTGCTCCTAAATTAGATGTATCACAA TTTACATCTTGCAGTAATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATTGTTATGGTGTAATAACAGTGCAGTTGTACTTGCAGCTGCTGGAG TACATTGGATAATGGCTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTGTTTATAATGCGATCATCATATGCCTCAAGATATGTGGTATTATG CAATATCCAAGTGTTTGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAGACTTCTTCATATGTTCTTCAGATTCCTATCAGATAAAAGCGCTG AAACTGGAGATACTTTCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAAAGAGTTTCAGGATTATATTAGAGATTCCGACCGGAGATTTGTTG CTGATACAGTTGCTGCCTTAGGACTATGTGCCCAGCGACTTCCCAAAATGGCAACTACATGCTTGGAAGGATTGTTGGCTCTGATTAGACAGGAACTTTC GTGTGGTGAAATCAGATCTGTGGATGGAGAAGAGACAGTGCTAATTCAGGCAATTATGTCCATCAAGTCAATTGTACAATTAGAACCCCCCAGTCATGAG AAGGTTATAATTCAGTTGATCCGTAGTTTGGATATAATCAAGGTTCCTGCTGCCCGTGCAATGATTATTTGGATGTTGGGGGAGTATTGCTCTTTGGGTG AGTTAATTCCAAGGATGTTGAGTACGGTGCTAAAGTATCTTGCTTGGTGTTTTCCTTCAGAAGCAATAGAAACCAAGCTTCAGATTCTTAATACAACTGC AAAGGTCTTACTATGCATTAAGGGAGAAGATATTTGGACCCTGAGAAAAGTCTGGAGTTATGTAATTGAACTGGCTGAGTGCGATCTGAACTACGATGTC CGTGATCGTTCGCGTTTCTTAAAGAAACTTCTCTCAAGCAATTTGGAGCCTCAAAATTTGGAAGAAGAAAACAGTGAATCACAAAGAAGAGACCAGTCCT ATGTACTTGCAGAATGCATATTTGGTAGACAAATAAAAGCTGTGACAGTGTCATCTGAACCCATCAATTACCGGTTTTATCTCCCCGGGTCTCTTTCGCA GTTAGTATTCCATGCAGCTCCAGGATATGAACCTCTCCCAAAACCTTGTAGTCTTCCATATATTGATCTTGATCAGCGTGATGGAGCTTCTGAGGGTGAT TCAGATGAGGAGGATGGTTCTGGCACATCTGGATCATTGGATGAGGAAAGTGCTTCTGATTATAGCTCTGAACAGTCAATTACTGGTTCAAGTGAAGACA GTGGCAGTAACGAGAATGTTTCTGGCAATGAAGGTGGCAACCATGCAGATCCATTGATTCAGATTTCAGACATTGGCAATGTCTATGATAACCAGAATGG TGGGGCTCATTCTAGCACAGCCGATTTTGGGGACTTGATGTCAACTAAGTCTCTTGAGTCTTGGTTGGATGAGGCACCCACATCATCAAACGAAACTGGA ACAGAGCAAAACCGAGTTCATAGATCTTCAGCGAGAATAACAATCAGAAATATCGAAAGCCGAGTTAAACCCAAATGCTACACACTTTTAGATCCTACAA ATGGAAATGGGTTAAAGGTGAATTATTCATTTTCATCTGAGGCTTCGAGCATTGCCTCCCATCTTATATGTCTAGAACTATACTTCGAAAATTTTTCATC GGAGCCCATGTTTGATATAATCTTAATAGATGAGAATTCTAGTAAAAGCTCAGATTCTATGGACCAAATATCTCCGACATCTGAAAATACCTTGAAAATC CATACTGATAAACCAGCATTGGTTTCCATGGAGGAGATCCCTTCTCTGGAGCCTGGCCAGACAGCAAACCGGACTGTACTCGTTCGCTTCCATCACCACC TTTTGCCTCTGAAACTGGCTATATTTTGCAATGACAAAACATTCCCTGTTAAGTTACGACCTGACATTGGATACTTTGTAAAACCACTTTCGATCAGTAT TGAAGCTTTCAGAGATAAGGAATCTCACCTTTGCGGGATGTTTGAATATGTGAGGAGTTGCGCCTTCACTGATCACATTCAAGAGCTGAACAAGGGAACT AACTCTTTGACAGAGGACAAATTTCTTGTGATCTGTGAAAGCTTAGCACTTAAGATGCTGAGCAATGCAAATCTTTCTCTTGTATCTGTGGATATGCCGG TCGCTTCCAACCTTGATGATGCTTCTGGTTTGTGCTTGCGTTTCAGCAGTGAGATCTTGAGCAACTCCATACCATGTTTAATTACAGTTACTGTTGAAGG TAAATGCTCCGACCCATTGACTGTTTCTGCAAAAGTCAACTGTGAAGAGACTGTATTTGGCTTAAATTTCTTAAATAGGGTTGTCAATTTCTTGGTGGAA CCATCTGTTACCCACTCATAAGTTTTGATATTGTATAGAAGATTCATAAATATTATTCATTTATGAGATGATATATTGGAAAAACTTGAAGTGCAATCGT TTTGGTTTTGGATGTATTTTAGGCTATGGTGAGTTATTGGAGTTATGGTTTTCCATTTTTTAATCTGTTGGGAAGGATGAAAATGGAGGGAGGTTTTGTA ATTCAACCTTGTATGACTGTAATCTCTAATTTTCCATAGATTTTCATGTCTTCTTTTCAATTCTCATTGAGTGTGGTTATGGTTTCTGGTGAAATGGAGC TTTCTAATTTAGTTTCTGATTCAGTTGTAAGCAAAACACAACTATTGTATGAGGAATTTATACTGAACCTTTTCTGAGAAGCATATTTTGTATTTTACTG AATTTTGATGTGAGATAAAAGAGTTGCTATGTTCATAAGCCTTCACTTTTATGGAGTTGCTATGGTCCCCTCTACCTAAATGTTTGATGCC
• Tissue: pods
• Gene name: LI_gene_137072;
• Additional information: details;

Expression of Ll_transcript_504069

FPKM

• PAB: 2.1
• PNAB: 4.2
• PS1: 4.8
• PS2: 5.1
• PS3: 6
• PW1: 4.1
• PW2: 6.6
• PW3: 5.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_504069

• Blastp: AP3-complex subunit beta-A from Arabidopsis with 58.04% of identity
• Blastx: AP3-complex subunit beta-A from Arabidopsis with 56.89% of identity
• Eggnog: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096)
• Kegg: Link to kegg annotations (AT3G55480)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432911.1)
• Pfam: Adaptin N terminal region (PF01602.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;