| Id Trinity | TRINITY_DN44189_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_340207 |
| Sequence | CTAATGTTTGAACACTTTGAACTGAAGAAGCAGTCAACTCATGTGACAATGTTGCAAATTATTACCAAAACAGACAAAAAGGTTGTAGAAAAGTATCTGA AGCTTTGGATTCTTGTTTACCATGAGAAAATCATGGGGGAACTTTCATTATGATGTAAATTGAACAGGAGTTTCAGACTTGTCTTTTGTCTTGTGGGCTC ACCCTGCACCTTTTATGTTATTCAAAAGCTACTTTCTCTATTATTAGTATCTTTTTATCTCTCTTATGCTTCTATCTAGCTATGATGCTGATAAGGAATT TTGTACCCTTCAACTATAGGAAAGTATCAAGTGATATGTTACAGAATGAGAGCTAAAAGTTGGATAAGTAAGAAGTTTAGCATTAGAGGGAAACTAAGAA AGATGAGTAAGTGTTTATGTTCTACCATGGAACAGTTTAAGGTTATTGATGATATAAGTTCTTCATCAGAGTCGTTGGCAACCAAAGACTACTCCGCAAG TGGCGGTTATTCCTCCCATCCTGGTGAAACAGAAACAAAGGTGGAAAATAGAAACATTGAAGAAGCAGAATCGTCTCTTCGCGAAAGTGGTTATTTAAAC TACGAGGAAGCTAGAGCACTATTAGGAAGACTGGAGTATCAGAAAGGTAATATTGAAGCTGCACTTCATGTCTTTGAAGGAATAGATATTGATGCTGTTA TTCCCAAGATCAAAATTTCCATATCTAGAAGACATGCATCAAATAGATCCCTTTCCCAAAGTGATGCAATGCCTCCTATGTCAATTCCTGCTGTTAGTTT ACTTCTTGAAGCTGTTTTTCTCAAGGCAAAATCATTGCAGACTCTTGGAAGGTTTCAAGGTGATTCTTTTATCTAGTTTCTTATGCTCATTTAATCTTTT TCATGCACATATCATCTTAGTTACCTTTCGCCTTACTGTGGAAACCGGTGATTTCTGTTAGATCCTTAAACATTCCGAACAAATCAAAGTCGTTTAATTT GCAGTCTATGAGTTATTTGTTAATGAACTTATGAATTTTTAGGTTCTGCTCAATCATGCAAAACTATTCTAGACACTTTTGAATCGGCATTACCAGAAGG TTTGCCTGAAAACTTTGTTTCAGACAGTAAATTACACGAGACTGTAATAAATGCGGTAGAACTGCTTCCAGAGTTGTGGAAACTTGCAGGTTCTCCTCAA GATGTCATCTCATCATATAGGCGTTCGTTGATTTATCACTGGAATCTTGACACTGAAACCATTTCAAGAATACAAAAGGACTTTGCTTTGTTTCTTTTGT ACGGTGGTTGCGAAGCTAGCCCTCCTTCTCTACGCTCTCAGTTGGATGGTTCGTATGTTCCAATAAACAATATAGAAGAAGCTGTTCTTCTGCTTCTGAT TGTGCTAAGAAAATCTGCTCTTGGAAGCATTGTTTTGGACCCTTCAATAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCGGGTGAATTCATGACCCTG GCTAAACATATTGAGGAATTGCTTCCAGAAACAATGGAGAGAAAAGAAAGATATTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTAATCATATGATTG CTTTGGATCTTTTGGGGAACTTTTTGAATAATAGAGAGAACTCGGATACCGTACAAGAATTACTTCTAGCTTCAAAAATTTGTGGAGACAACATGGTTTG TGTTGAAGATGGAATCAAATATGCTAACAAAGCCATTTCTCAGTTGCATGGAAAATGCATGCAGATGTTAGCTATTACAAATTGCATACTAGGTGTTCTA CTGTCCTCAAAATCGAGGTTAATTGGTTTTGAATCCGAGAAGGTTTTGATGCAGTCTAAAGCACTCAATGCTCTAGGAACTGCTGAAAGAATGATGAGGG AAAGTGATCCATACATTGTCCTTAATCTTTGTTTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAGAGAAACTGGTTGCCCTTGA AGGTGGATCTAGTATTACCGGATATATACTACTGGCACGAATTTTATCGGCTCAAAAGAATTTTGTAGATGCAGAGATTGTTATTGATGCAGCTATAGAT CAATGTGGAAAATGGGAACAAGGAGTTTTGTTGAGAACTAAAGCTAAACTGCGGATCGCGCAGGGAAAATTAAAGAATGCAATCGAGACATATACTTTTC TTCTTGCTGTTCTTCAAGTACAGAAAAAAAGTTCAGTTATTTCAAGTAAAGTTATGAAGAATAAGGGAAACTGCGACAGAAGACTGGAAATGGAAATTTG GCACGATTTAGCCAACGTGTACACATCGTTATCGCAGTGGCAGGACGCTGAAGTTTGTCTTGCAAAATCTCAGGCCATTAATCCCTATTCTGCTTCTAGA TGGCATTCCACAGGTATATTGCTTATCTTCTTACGCTTCCAAACTCGTCATTCAATCTCGATAGGTTCTATATATCTTTTCAATTTCCTTCTCATCCATA TTTTAGTATCAGATTGCAAGCTCCTGAAAAGTATTTGACACTTCAGACAATTCTGATAGTGCAGATTAAAGGGTCTGCATTTTGCAAATTCTACATGCTG CAACAGAAATAGAATCTTAATTTTGTTGAAGCTTAATAGGATTTACATTCCACACATTCTTCAAGTCCTCCATAACATTTTATTAAGGAAGTTAATTACT TACATTATTCATATAGCGAAGTCGATTTATAATTTTGCAGGCCTACTTTTTGAAGCCAGAGGACTTCATCAAGAGGCTATGAAATCATTTAGAAAAGCAT TAGATATTGATCCCAACCATGTCCCAAGTTTGATATGCACTGCTGGTGTTATGAGACATCTTGGTTGTCAATCATCTCCAATCATTAGAAGCCTTCTCAC TGATGCACTATGGCTTGACAGGACTAACCCATCTACTTGGTACAATCTTGGATTGCTCTACAAAGATGATTTCGGGATATCGTCGCCGGAAGCTGCTGAA TGCTTTCAGGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAGCCAATTTTGCTACAATTTTTGATTCTTTTTTGTTTTTGTTTGA AACATATATCATAGTGAGTTATAAGTCTGGTTGTAAAGTTCAGCTTTCTATAACTTTTGCATAGGTCATTTTGTTAGAACACAGCTAATGTCATTAATCT TATGTTGATAGAAAAAATTAGAGAAGTAATGTAATTAATCACTTCTATTTGGTGATTTTGTTCAGCAACTTATGATTTTATATTTTTATATATCATCTCG CACACTACTTTAATGTGCATGCATTAGTAGTGGATTGGCCTTGTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_137259; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_340207
| Blastp | Protein NPGR2 from Arabidopsis with 46.43% of identity |
|---|---|
| Blastx | Protein NPGR2 from Arabidopsis with 50% of identity |
| Eggnog | Tetratricopeptide repeat(ENOG410XQ09) |
| Kegg | Link to kegg annotations (AT4G28600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428020.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |