Ll_transcript_477979

• Id Trinity: TRINITY_DN44440_c0_g1_i1
• Name Transcript: Ll_transcript_477979
• Sequence: AACTGAAGTCCAAAATCCAATCCATAACGAGTGACTCGGGAGACTCAGTGATGCAACTCAGCAGCAACCTGTTATCAATTAAACCGTCACCACCACCACC ACCGAGTCCAAAACCGTCATTATTCAAACCCATCTTCTGCTTTCCCAACTCGGCCGAGTCAAACTCACTCGAATTCGAGACCCTACAATGGAGTTCCATA TGCAACCAACTCTCTTCCTTCACCTCAACCTCCATGGCTTCTTCTACAGCACAAAATGCAACATTACCAATAGGCCGAACCCTCCACGAGAGTCAGAAGC TTCTCGATCAGACTTCTGCGGCAAGGTTAGTCGCTCACCCCATGGATTTCTCCGGAATCGATGATTTATCGGAGATTCTTGCTCTTGCTGCTTCCGGTCA ATTGCTAACGATCCGGGAACTTTGTACCGTTCGACGCACGCTTCGAGCTTCAAGGGAACTGTTCCAGAAGCTCAATGAATTGGCTTCCAACTATAGTCAT CCACAAAGGTACTTACCCCTTCTCGAAATACTGCAAAATTGTAACTTTCAAGTGGGGTTGGAGCGTAAAATTGAATTTTGCATCGATTGCAATCTTTCAG TAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAAAGAAAGAGAAACATAGAAATTCTGGATTCTTTGTTGAAGGAAGTATCATCTCA AATTTTTCAGGCAGGGGGCATTGACAGACCATTAATAACAAAGCGTCGGTCTAGAATGTGTGTGGGTATTAGGGCTTCCCATAGATATTTGCTTCCAGAT GGTATAATTCTGAATGTTAGCAGTTCTGGAGCAACATACTTTATGGAACCCAAAGATGCTATAGATCTAAACAACATGGAAGTTAGGCTTTCAAACTCTG AGAAGGCTGAAGAAAGAGCAATTTTAAGTTTGCTTGCATCTGAAATAGCAAATTCAGAACGGGAGATAAACTATTTATTGGATAAAATCCTTGAGGTTGA TCTTGCTTTTGCAAGAGCTGCATATGCTCAATGGATGAATGCAGTGTGCCCAATTTTCAGTTTAGGTAATTCTGAAGGCTGTGATTCTGTTGAAGAGGAT GATGATTTAGCGGTAAATATTGGTGGTATGCGTCATCCATTACTTCTGGAGTCTTCTCTAGAAAAAATTCCAAAGAATGTTGCATTAAAATCCAGAAATG CCACTGAGTCGGGTAATGGAAATGGAGCAGTGGCTTCTAAAAATGTTTTTCAAGGCATACCAGACTTCCCTGTGCCTGTTGATTTTAAAATTAGACACGG AACCAGAGTGGTGGTGATCTCAGGTCCTAATACAGGAGGGAAAACTGCTTCCATGAAAACATTGGGCCTAGCATCACTTATGTCAAAGGCTGGAATGCAT TTGCCTGCCAAAAACCATCCAAAACTTCCTTGGTTTGATCTTATCCTGGCAGATATTGGAGATCACCAGTCCCTAGAACAAAATCTCTCAACCTTTAGTG GGCACATCTCACGTATCTGTAAGATTTTGGAAGTTGCCTCAAAACAATCACTTGTTCTAATTGATGAAATTGGCAGTGGAACTGATCCTTCAGAAGGTGT AGCTCTTTCTGCCAGTATCTTGCAATATCTTAAAGATCATGTTAACTTGGCCGTTGTGACTACTCATTATGCTGATCTAAGTAGAATGAAGGAAAAGGAT ACCCGTTTTGACAATGCAGCTATGGAATTTTCTCTTGAAACATTACAGCCAACCTATAGGGTCTTATGGGGATGCACTGGTGATTCAAATGCATTGAGCA TAGCACAGTCCATTGGATTTGATAGAAATATAATTCATCGTGCACAAGAATGGGTGGAGAAGTTAAAACCAGAGCAGCAGCAAGAGCGGAGAGGAATGCT CTATCAGTCATTACAGGGGGAAAGAAACAGATTAAAGGCTCAGACTGAAAGGGCTGCATCCATTCATGTTGAAATTATGAACATATACTATGAGGTAAAA TCTAGATGTTTAACTAGAAAGACATTCTTTGTTTCTTGACTCTAGTTTCTTTTCCTTGGTTGATATAGCATTACAATCAAAGTTGTTACTTGTCATGCTC ATCTGAGATTTGCACCCTTAATAAAAAAGGACTCCGTTAATTGACCACAATAGGGTAGACAGTGGTGAGGATGTTGTATAGGTTTGTGAATTGATTAACA CTTCATTTAGTTTTCCTTGTAACTTGTAATCTTTAGTAGATGTGACCAATAATAGGAGATGGCCAGCCAACAGCTGCTAATTTTTCAATATTTTTTGGGG AGTTACATCTAGAATATGATAATCTGATTGACTATATCCACAATTATAAAATAAGTACATAGATTCTTCCATCAAAGAAGTTCATAATGCCTTTATTGCA AAAATTTGTCCAGCAAAAGAAATCTTGAGCATTTATCAGTAGACTTAAATTGGGTATCATCATATTTGGAGTTGTCCATTTCTTTGTTTTTTCTCCTCTT ATTATTTTATTCTTTTAAAAAAAATATGAAGATCCAAGCGGAGGCAGAAGATCTTGATAGACGTGAGGTGGAACTTATGGCAAAGGAAACCCAACAGGTC CAACAAGAGCTAGAAGATGCAAAATCTCAGATAGAAACCGTGATACAGGAGTTTGAAAAGCTACTCACAGTTTCTGGTCGCGATCAACTCAATTCACTTA TTAGAGAATCCGAATCTGCAATTGCCTCCATTGTAAAAGCTCATACACCTGCTGTTAAATATCCCATTAATGAAGCTGATCAGGCTTCATATACTCCACA ATTTGGAGAGCAAGTCCTTGTCAAGGGTTTGGGAGGGAAATTAGCCACAGTGTTAGAGTCGCCTGCAGATGACGAGACAATCCTGGTACAGTATGGTAAA GTGAAAGCCCGTGTGAAGAAAAGTAGTATCAGAGCTATTCCATCTAGTGCAAAGAATGTTGTACCTAGTTCTTCTACACATCGGCAGGGGCAGAATCTGC AAAATAGAGAATACCGGGAAAATTTGGAGACTGAGCTTTCTTATGGTCCAGTGGTTCAGACATCTAAGAATACGGTGGACCTACGCGGTATGCGAGTGGA AGAAGCATCTATCAACCTTGAGATGGCAATTAATGCAAGCCGGCCATATTCAGTTCTCTTCATCATACATGGGATGGGCACTGGTGCTATTAAGGAGCGT GCACTTGAGATTCTGAGAAATCATGCTCGTGTTACTAATTATGAACCAGAAAATCCAATGAATTATGGTTGTACCATTGCTTATGTCAAGTGAACCATCA TTTTCCTGGTGCAGTAAGCTATGCCATTGCAAGCTTGTGCCCTTTTTGTTGCTACTTTTTTACTTTTCCTGTTCCCTCATTACCTGATGAATACGTACAC AAACTCATTTCAAACCCAGTTTGTAAGATTTAGTAGTTTTAATTTGATTTTTTCGTTGAAGTTCTAGTTTGCATTTTATTCGTCCTTTATTTTGTTCATA CATAGTATATGGAGAATTCTTCCACAGCTTAAAA
• Tissue: pods
• Gene name: LI_gene_137703;
• Additional information: details;

Expression of Ll_transcript_477979

FPKM

• PAB: 0.1
• PNAB: 0.1
• PS1: 0.1
• PS2: 0.2
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_477979

• Blastp: Endonuclease MutS2 from Synechocystis with 35.28% of identity
• Blastx: Endonuclease MutS2 from Synechocystis with 34.88% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (sll1772)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421908.1)
• Pfam: MutS domain V (PF00488.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;